|
Match type
|
Polish
|
Lordec
|
TAMA low
|
TAMA high
|
|---|
|
Total Genes
|
25,731
|
166,766
|
168,328
|
38,743
|
|
Total Transcripts
|
126,288
|
753,756
|
752,996
|
135,218
|
|
Ensembl Loci Overlap
|
19,348
|
30,835
|
30,947
|
21,284
|
|
Ensembl Transcript Matches
|
17,948
|
24,660
|
24,691
|
15,854
|
|
Predicted Novel Gene Loci
|
8519
|
139,769
|
141,097
|
23,302
|
|
Predicted Novel Transcripts
|
106,243
|
724,316
|
723,759
|
118,148
|
- Comparison of gene and transcript numbers across pipelines broken down into different categories. Ensembl loci overlap refers to the number of Ensembl v94 annotation gene models that are overlapped on the same strand by gene models from each Iso-Seq annotation. Transcript matches refer to Ensembl v94 transcript models with identical exon-intron structures as transcript models in each Iso-Seq annotation. The Ensembl v94 human annotation consists of 58,735 gene loci and 206,601 unique transcript models. In some cases, multiple Ensembl gene loci are overlapped by a single Iso-Seq gene locus leading to the differences between matching loci and predicted novel loci
