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Table 3 Ethylene related genes overexpressed in the minute hilum (mi) isoline UC413

From: Overexpression of an ethylene-forming ACC oxidase (ACO) gene precedes the Minute Hilum seed coat phenotype in Glycine max

Stage Glyma model UC7 RPKM AVE UC413 RPKMAVE UC7/UC413 Ratio Gene Category Best Arabidopsis Annotation
EH10 Glyma.09G008400.1 0.03 163.15 1.8 × 10−4 ACO Hormone Ethylene-forming enzyme
EH10 Glyma.15G112700.1 0.03 65.84 4.6 × 10−4 ACO Hormone Ethylene-forming enzyme
EH10 Glyma.02G268000.1 0.40 6.92 5.8 × 10−2 ACO Hormone Ethylene-forming enzyme
EH10 Glyma.14G049500.1 0.29 3.14 9.2 × 10−2 ACO Hormone Ethylene-forming enzyme
EH10 Glyma.02G229400.1 1.72 4.38 0.39 ETO1 Signaling Tetratricopeptide repeat
EH10 Glyma.14G197100.1a 1.20 2.91 0.41 ETO1 Signaling Tetratricopeptide repeat
EH10 Glyma.03G191000.1a 1.61 3.79 0.43 CTR1 Signaling Protein kinase superfamily
EH10 Glyma.19G191600.1a 1.70 3.92 0.43 CTR1 Signaling Protein kinase superfamily
EH10 Glyma.09G002600.1a 2.43 5.30 0.46 ETR1 Signaling Ethylene receptor 1-related
EH10 Glyma.10G188500.1 6.67 18.71 0.36 ETR2 Hormone Ethylene response sensor 2 rel.
EH10 Glyma.10G008500.1 4.71 15.01 0.31 EIN4 Hormone Sig trans his kin C2H4 sensor
EH10 Glyma.05G132900.1 3.66 11.04 0.33 RAN1 Transporter Copper-exporting ATPase
EH10 Glyma.08G087300.1 4.02 12.15 0.33 RAN1 Transporter Copper-exporting ATPase
EH10 Glyma.15G152000.1 14.00 36.37 0.39 AP2/ERF T. factor Ethylene-responsive element
EH25 Glyma.09G008400.1 0.10 134.75 7.4 × 10−4 ACO Hormone Ethylene-forming enzyme
EH25 Glyma.15G112700.1 0.07 61.31 1.1 × 10−3 ACO Hormone Ethylene-forming enzyme
EH50 Glyma.09G008400.1 0.05 153.80 3.3 × 10−4 ACO Hormone Ethylene-forming enzyme
EH50 Glyma.15G112700.1 0.07 54.16 1.3 × 10−3 ACO Hormone Ethylene-forming enzyme
EH50 Glyma.08G087300.1 9.16 20.54 0.45 RAN1 Transporter Copper-exporting ATPase
EH50 Glyma.15G152000.1 27.25 65.17 0.42 AP2/ERF T. factor Ethylene-responsive element
  1. a The differential expression of these genes had pval < 0.05 but higher padj value. All others are padj < 0.05
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