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Table 3 Ethylene related genes overexpressed in the minute hilum (mi) isoline UC413

From: Overexpression of an ethylene-forming ACC oxidase (ACO) gene precedes the Minute Hilum seed coat phenotype in Glycine max

Stage

Glyma model

UC7 RPKM AVE

UC413 RPKMAVE

UC7/UC413 Ratio

Gene

Category

Best Arabidopsis Annotation

EH10

Glyma.09G008400.1

0.03

163.15

1.8 × 10−4

ACO

Hormone

Ethylene-forming enzyme

EH10

Glyma.15G112700.1

0.03

65.84

4.6 × 10−4

ACO

Hormone

Ethylene-forming enzyme

EH10

Glyma.02G268000.1

0.40

6.92

5.8 × 10−2

ACO

Hormone

Ethylene-forming enzyme

EH10

Glyma.14G049500.1

0.29

3.14

9.2 × 10−2

ACO

Hormone

Ethylene-forming enzyme

EH10

Glyma.02G229400.1

1.72

4.38

0.39

ETO1

Signaling

Tetratricopeptide repeat

EH10

Glyma.14G197100.1a

1.20

2.91

0.41

ETO1

Signaling

Tetratricopeptide repeat

EH10

Glyma.03G191000.1a

1.61

3.79

0.43

CTR1

Signaling

Protein kinase superfamily

EH10

Glyma.19G191600.1a

1.70

3.92

0.43

CTR1

Signaling

Protein kinase superfamily

EH10

Glyma.09G002600.1a

2.43

5.30

0.46

ETR1

Signaling

Ethylene receptor 1-related

EH10

Glyma.10G188500.1

6.67

18.71

0.36

ETR2

Hormone

Ethylene response sensor 2 rel.

EH10

Glyma.10G008500.1

4.71

15.01

0.31

EIN4

Hormone

Sig trans his kin C2H4 sensor

EH10

Glyma.05G132900.1

3.66

11.04

0.33

RAN1

Transporter

Copper-exporting ATPase

EH10

Glyma.08G087300.1

4.02

12.15

0.33

RAN1

Transporter

Copper-exporting ATPase

EH10

Glyma.15G152000.1

14.00

36.37

0.39

AP2/ERF

T. factor

Ethylene-responsive element

EH25

Glyma.09G008400.1

0.10

134.75

7.4 × 10−4

ACO

Hormone

Ethylene-forming enzyme

EH25

Glyma.15G112700.1

0.07

61.31

1.1 × 10−3

ACO

Hormone

Ethylene-forming enzyme

EH50

Glyma.09G008400.1

0.05

153.80

3.3 × 10−4

ACO

Hormone

Ethylene-forming enzyme

EH50

Glyma.15G112700.1

0.07

54.16

1.3 × 10−3

ACO

Hormone

Ethylene-forming enzyme

EH50

Glyma.08G087300.1

9.16

20.54

0.45

RAN1

Transporter

Copper-exporting ATPase

EH50

Glyma.15G152000.1

27.25

65.17

0.42

AP2/ERF

T. factor

Ethylene-responsive element

  1. a The differential expression of these genes had pval < 0.05 but higher padj value. All others are padj < 0.05