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Table 4 Auxin and gibberellin related genes overexpressed in the minute hilum (mi) isoline UC413

From: Overexpression of an ethylene-forming ACC oxidase (ACO) gene precedes the Minute Hilum seed coat phenotype in Glycine max

Stage Glyma Model UC7 RPKM Ave UC413 RPKM Ave UC7/UC413 Ratio Gene Category Best Arabidopsis Annotation
A: Auxin related genes
EH10 Glyma.03G158700.1 3.85 10.29 0.37 Aux/IAA14 Hormone Indole-3-acetic acid inducible 14
EH10 Glyma.05G143800.3 4.87 12.48 0.39 Aux/IAA6 Hormone Auxin response factor 6
EH10 Glyma.13G127000.1a 4.08 9.55 0.43 Aux/IAA11 Hormone Indole-3-acetic acid inducible 11
EH10 Glyma.19G161100.1 1.12 3.29 0.34 Aux/IAA14 Hormone Indole-3-acetic acid inducible 14
EH10 Glyma.13G354100.1a 8.22 18.17 0.45 Aux/IAA18 Hormone Auxin-responsive prot. IAA18
EH10 Glyma.15G012700.2a 34.74 79.41 0.44 Aux/IAA15 Hormone AUX/IAA transcriptional regulator
EH10 Glyma.02G142600.1 10.72 31.26 0.34 AUX/IAA Hormone AUX/IAA transcriptional regulator
EH10 Glyma.01G002100.1a 2.72 6.96 0.39 ARF19 Hormone Auxin-response factor − 19-AUX/IAA
EH10 Glyma.09G034300.1 0.06 1.03 0.046 WRKY23 Tr. Factor WRKY Transcription factor 48 or 23
EH10 Glyma.03G157000.3a 2.62 6.43 0.35 DUF828 Hormone Canalization prot. w. pleckstrin region
EH10 Glyma.07G051800.1a 0.85 2.20 0.39 SAUR Hormone SAUR-like auxin-responsive protein
EH10 Glyma.17G046000.1 10.43 33.4 0.31 SAUR Hormone SAUR-like auxin-responsive protein
EH10 Glyma.01G190600.1a 2.18 3.98 0.55 GH3 Hormone Auxin-responsive GH3 protein
EH10 Glyma.05G101300.1 0.55 1.88 0.29 GH3 Hormone Auxin-responsive GH3 protein
EH10 Glyma.19G128800.1a 2.26 1.64 1.38 PIN1 Transport Auxin efflux carrier component 1
B: Gibberellin related genes
EH10 Glyma.07G236100.1 0.38 3.79 0.10 GA2ox4 Hormone Gibberellin 2-oxidase 4
EH10 Glyma.17G037300.1 0.24 5.75 0.04 GA2ox4 Hormone Gibberellin 2-oxidase 4
EH10 Glyma.02G245600.1 0.03 3.02 0.01 GAST1 Hormone Gibberellin-regulated prot; Extensin
EH25 Glyma.07G236100.1 0.47 2.33 0.20 GA2ox4 Hormone Gibberellin 2-oxidase 4
EH25 Glyma.17G037300.1 0.14 3.02 0.05 GA2ox4 Hormone Gibberellin 2-oxidase 4
EH25 Glyma.02G245600.1 0.03 1.83 0.02 GAST1 Hormone Gibberellin-regulated prot; Extensin
  1. a The differential expression of these genes had pval < 0.05 but higher padj value. All others are padj < 0.05
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