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Table 4 Auxin and gibberellin related genes overexpressed in the minute hilum (mi) isoline UC413

From: Overexpression of an ethylene-forming ACC oxidase (ACO) gene precedes the Minute Hilum seed coat phenotype in Glycine max

Stage

Glyma Model

UC7 RPKM Ave

UC413 RPKM Ave

UC7/UC413 Ratio

Gene

Category

Best Arabidopsis Annotation

A: Auxin related genes

EH10

Glyma.03G158700.1

3.85

10.29

0.37

Aux/IAA14

Hormone

Indole-3-acetic acid inducible 14

EH10

Glyma.05G143800.3

4.87

12.48

0.39

Aux/IAA6

Hormone

Auxin response factor 6

EH10

Glyma.13G127000.1a

4.08

9.55

0.43

Aux/IAA11

Hormone

Indole-3-acetic acid inducible 11

EH10

Glyma.19G161100.1

1.12

3.29

0.34

Aux/IAA14

Hormone

Indole-3-acetic acid inducible 14

EH10

Glyma.13G354100.1a

8.22

18.17

0.45

Aux/IAA18

Hormone

Auxin-responsive prot. IAA18

EH10

Glyma.15G012700.2a

34.74

79.41

0.44

Aux/IAA15

Hormone

AUX/IAA transcriptional regulator

EH10

Glyma.02G142600.1

10.72

31.26

0.34

AUX/IAA

Hormone

AUX/IAA transcriptional regulator

EH10

Glyma.01G002100.1a

2.72

6.96

0.39

ARF19

Hormone

Auxin-response factor − 19-AUX/IAA

EH10

Glyma.09G034300.1

0.06

1.03

0.046

WRKY23

Tr. Factor

WRKY Transcription factor 48 or 23

EH10

Glyma.03G157000.3a

2.62

6.43

0.35

DUF828

Hormone

Canalization prot. w. pleckstrin region

EH10

Glyma.07G051800.1a

0.85

2.20

0.39

SAUR

Hormone

SAUR-like auxin-responsive protein

EH10

Glyma.17G046000.1

10.43

33.4

0.31

SAUR

Hormone

SAUR-like auxin-responsive protein

EH10

Glyma.01G190600.1a

2.18

3.98

0.55

GH3

Hormone

Auxin-responsive GH3 protein

EH10

Glyma.05G101300.1

0.55

1.88

0.29

GH3

Hormone

Auxin-responsive GH3 protein

EH10

Glyma.19G128800.1a

2.26

1.64

1.38

PIN1

Transport

Auxin efflux carrier component 1

B: Gibberellin related genes

EH10

Glyma.07G236100.1

0.38

3.79

0.10

GA2ox4

Hormone

Gibberellin 2-oxidase 4

EH10

Glyma.17G037300.1

0.24

5.75

0.04

GA2ox4

Hormone

Gibberellin 2-oxidase 4

EH10

Glyma.02G245600.1

0.03

3.02

0.01

GAST1

Hormone

Gibberellin-regulated prot; Extensin

EH25

Glyma.07G236100.1

0.47

2.33

0.20

GA2ox4

Hormone

Gibberellin 2-oxidase 4

EH25

Glyma.17G037300.1

0.14

3.02

0.05

GA2ox4

Hormone

Gibberellin 2-oxidase 4

EH25

Glyma.02G245600.1

0.03

1.83

0.02

GAST1

Hormone

Gibberellin-regulated prot; Extensin

  1. a The differential expression of these genes had pval < 0.05 but higher padj value. All others are padj < 0.05
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BMC Genomics

ISSN: 1471-2164

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