Skip to main content
Fig. 4 | BMC Genomics

Fig. 4

From: Progress in quickly finding orthologs as reciprocal best hits: comparing blast, last, diamond and MMseqs2

Fig. 4

Reciprocal best hits found by all programs with eukaryotic proteomes. The proportion of RBH obtained with the fast programs, relative to the number obtained with blastp, is more similar when genomes are in the same taxonomic group as the reference genome (Ascomycota for S. cerevisiae, Chordata for M. musculus). Both diamond and mmseqs showed improved proportions compared to lastal. Bottom: most of the RBH detected are shared by all programs. Both diamond and mmseqs share the most RBH with blastp

Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us