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Fig. 2 | BMC Genomics

Fig. 2

From: Genomic differences between the new Fusarium oxysporum f. sp. apii (Foa) race 4 on celery, the less virulent Foa races 2 and 3, and the avirulent on celery f. sp. coriandrii

Fig. 2

The phylogeny of the Foa and Foci strains within the FOSC. BUSCO v. 2.0 (Benchmark of Unique Single Copy Orthologs) was used to identify 2718 full-length, single copy genes that were in all strains. Sequences were aligned with MUSCLE and concatenated into a single ~‚ÄČ5.5Mbp sequence. A phylogenetic tree was generated with RaxML with the general time reversible evolutionary model. Support for the tree is based on 1000 bootstrap replicates; bootstrap values below 70 are not shown. The branches corresponding to FOSC Clades 1, 3, and 2 are color coded with green, red, and blue, respectively. Foa race 2 is indicated with an arrow and the Foa races 3 and 4 and the Foci isolates are indicated with a star

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