Skip to main content

Table 2 Statistics for the assembled Fusarium oxysporum f. sp. apii and f. sp. coriandrii genomes

From: Genomic differences between the new Fusarium oxysporum f. sp. apii (Foa) race 4 on celery, the less virulent Foa races 2 and 3, and the avirulent on celery f. sp. coriandrii

F. oxysporum forma specialis / race Isolate ID No. contigs / scaffolds Genome size, Mb Maximum contig size, Mb N50, Mb Average PacBio RSII coverage Illumina coverage (& technologya) GenBank Assembly No.
apii race 4 Foa274.AC 74 67.4 7.0 4.4 70 120 (H), 35 (M) JAAOOQ000000000
apii race 3 FoaR3b 76 65.4 7.0 4.0 72 107 (H) JAAOOP000000000
apii race 2 Foa207.A 50 64.8 6.5 3.5 58 95 (H) JAAOOO000000000
coriandrii Foci3–2 50 65.5 6.7 5.0 52 329 (N) JAAOON000000000
coriandrii FociGL306 51 65.1 6.8 5.0 50 273 (N) JAAOOM000000000
lycopersicic 4287d 114 61.4 4.4 2.0 NAe NA GCA_000149955.2
  1. aPaired-end reads were from ‘H’ (Hiseq 4000, 150 bp), ‘N’ (Novaseq, 150 bp), and/or ‘M’ (MiSeq, 250 bp)
  2. bSynonym, NRRL 38295
  3. cUsed here as a reference genome [4, 16]
  4. dSynonym, NRRL 34936
  5. eNA Not applicable