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Table 2 Table summarising repeat content in the E. tetradactylum genome, detailing the number of elements, overall length, and genomic proportion, for each major repeat type, for a standard RepeatMasker analysis (left) and a custom annotation approach (right, see methods for details)

From: Genome of the four-finger threadfin Eleutheronema tetradactylum (Perciforms: Polynemidae)

Repeat Class Traditional Repeat Annotation (RepeatMasker) Refined Conservative Repeat Annotation
No. elements Total Length (Mb) Percentage sequence (%) No. elements Total Length (Mb) Percentage sequence (%)
Retroelement 155419 19.14 3.14 150453 21.92 3.59
SINE 13534 1.46 0.24 12936 1.63 0.27
LINE 60949 11.49 1.88 60294 12.18 1.99
LTR element 80936 6.19 1.01 77223 8.11 1.33
DNA transposon 298755 26.04 4.27 276340 32.42 5.31
Rolling-circle 15702 1.28 0.21 15557 2.05 0.34
Unclassified 32821 7.88 1.29 29890 7.80 1.28
Other 11396 1.00 0.16 19703 2.40 0.39
Total repeats 514093 55.34 9.07 491943 66.59 10.91