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Fig. 4 | BMC Genomics

Fig. 4

From: HiCHap: a package to correct and analyze the diploid Hi-C data

Fig. 4

Allele-specific chromatin 3D organization. (a) Examples in cell line GM12878. Arrow points to the allele-specific compartment. Circle represents the success of loop calling in paternal contact map and dashed circle denotes the failure of loop calling in maternal contact map. (b) Averaged contact maps for maternally and paternally biased boundaries in cell line GM12878, cell type E7.5 and cell type ICM. (c) Averaged contact maps for maternally and paternally biased chromatin loops in cell line GM12878. The norm aggregate peak analysis was used for presentation

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