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Table 3 Performance of different feature combinations on the independent data set

From: Mal-Prec: computational prediction of protein Malonylation sites via machine learning based feature integration

Features

Acc (%)

Sen (%)

Spec (%)

F1 (%)

MCC (%)

CKSAAP

77.55

77.14

77.97

77.59

65.18

AAindex

61.73

65.43

57.97

63.26

52.61

One-hot

58.71

61.43

55.94

59.97

51.44

CKSAAP (exclude)

86.19

86.86

85.51

86.36

76.19

AAindex (exclude)

79.42

80.57

78.26

79.77

67.30

One-hot (exclude)

71.08

76.29

65.80

72.65

58.65

ALL

90.65

89.71

91.59

90.62

83.04

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BMC Genomics

ISSN: 1471-2164

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