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Table 4 The methylation level of validated genes between WGBS and BSP method

From: Chicken cecal DNA methylome alteration in the response to Salmonella enterica serovar Enteritidis inoculation

Gene name

Location

Meth_direction in WGBS

BSP

P value

Inoculated group

Control group

Difference/ meth_direction

HOXA3

Chr2:32659632

Hypo-

0.4

0.6

−0.2

0.212

Chr2:32659658

Hyper-

0.7

0.2

0.5

0.035

HOXD12

Chr7:16384244

Hyper-

1

0.2

0.7

0.027

Chr7:16384255

Hyper-

0.7

0.4

0.3

0.113

Chr7:16384275

Hyper-

0.5

0

0.5

0.046

Chr7:16384301

Hyper-

0.8

0

0.8

0.027

DNAH7

Chr7:9749766

Hypo-

0.4

0.8

−0.4

0.051

Chr7:9750310

Hyper-

0.8

0.2

0.6

0.011

NPAT

Chr1:180358709

Hypo-

1

0.7

0.3

0.104

Chr1:180358843

Hypo-

0.6

0.9

−0.3

0.067

Chr1:180358844

Hyper-

0.9

0.5

0.4

0.041

MTR

Chr3:37701958

Hyper-

0.7

0.2

0.5

0.039

Chr3:37702200

Hyper-

0.6

0.1

0.5

0.042

Chr3:37702201

Hyper-

0.7

0

0.7

0.014

ZFHX3

Chr11:19406308

Hypo-

0.2

0.5

−0.3

0.169

Chr11:19406309

Hypo-

0.3

0.7

−0.4

0.047

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BMC Genomics

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