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Table 3 Imputation accuracy (R2dose) in 500 target samples when additional animals were used for haplotype inference

From: Investigating the accuracy of imputing autosomal variants in Nellore cattle using the ARS-UCD1.2 assembly of the bovine genome

  Number of additional samples used for the phasing of 500 target base animals
0 600 1200 1800 2400
Rare (MAF < 2%) 0.748 0.760 0.765 0.767 0.768
Low-frequency (MAF < 5%) 0.804 0.815 0.819 0.820 0.821
Common (MAF > 5%) 0.948 0.952 0.953 0.954 0.954
Global 0.903 0.910 0.912 0.913 0.913