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Table 5 Azospirillum brasilense Sp245 sRNAs with homologs in BSRD and homology with Rfam families

From: Genome-wide identification of Azospirillum brasilense Sp245 small RNAs responsive to nitrogen starvation and likely involvement in plant-microbe interactions

sRNA Id

sRNA gene ID

Subject

Strain name

Score

E-value

Alignment Length / homology (%)

Function

AbSp_39

AZOBR_RS26955

sgur2698.1

Geobacter uraniireducens Rf4

34.2

0.036

100

Cyclic di-GMP-II riboswitch

AbSp_308

AZOBR_RS37495

scch1500.1

Chlorobium chlorochromatii CaD3

36.2

0.021

100

Regulatory element

AbSp_345

AZOBR_RS30660

ssme817.1

Sinorhizobium meliloti 1021

36.2

0.019

100

cis-encoded antisense RNA

AbSp_93

AZOBR_RS24525

seco498.1

Escherichia coli K12 MG1655

50.1

7.00E-07

96

Trans-encoded antisense RNA

AbSp_2

AZOBR_RS36450

RF0000

-NA

63.1

1.20E-14

100

tRNA family

AbSp_8

AZOBR_RS18695

RF00005

-NA

60.2

7.90E-14

100

tRNA family