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Fig. 2 | BMC Genomics

Fig. 2

From: gCAnno: a graph-based single cell type annotation method

Fig. 2

Cell type specificity of gene sets detected by gCAnno. a The heatmap of the expression of each cell type specific gene sets in liver, pancreas, HCC & ICCA and AT root datasets. The expression values are normalized by z-score across different cell types. b t-SNE plots showing the expression of rank one cell specific gene in four cell types in liver dataset. (i) t-SNE projection showing a reference map of all cell types. The expression of (ii) SPARCL1 in Periportal_LSECs, (iii) TRCA in AlfaBetaT, (iv) FXYD2 in Cholangiocytes and (v) MZB1 in Plasma_cells (t-SNE plots for all cell types are in Additional file 10: Figure S6)

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