From: A comprehensive evaluation of long read error correction methods
Method | # Reads | # Bases | # Aligned | # Aligned | Maximum | N50 | Genome | Alignment | CPU time | Wall time | Memory |
---|---|---|---|---|---|---|---|---|---|---|---|
 |  | (Mbp) | reads | bases (Mbp) | length (bp) | (bp) | fraction (%) | identity (%) | (hh:mm:ss) | (hh:mm:ss) | usage (GB) |
Original | 239408 | 1462.7 | 235620 | 1332.6 | 35196 | 8656 | 99.976 | 87.2637 | - | - | - |
Non-hybrid methods | |||||||||||
FLAS | 173187 | 1093.2 | 173046 | 1078.8 | 30046 | 8132 | 99.976 | 99.5777 | 11:46:31 | 01:15:40 | 7.9 |
LoRMA | 650467 | 1142.0 | 650333 | 1141.4 | 18127 | 2323 | 99.951 | 99.7583 | 172:24:38 | 07:03:03 | 72.9 |
Canu | 38228 | 453.2 | 38172 | 446.7 | 28748 | 12021 | 99.975 | 99.5864 | 15:18:34 | 00:50:12 | 6.5 |
Short-read-assembly-based methods | |||||||||||
HG-CoLoR | - | - | - | - | - | - | - | - | - | - | - |
FMLRC | 238706 | 1380.8 | 236883 | 1311.0 | 33658 | 8185 | 99.977 | 99.3889 | 07:52:17 | 00:28:55 | 5.5 |
HALC | 238787 | 1395.4 | 238097 | 1287.6 | 34785 | 8270 | 99.976 | 99.0796 | 52:12:11 | 09:45:10 | 29.0 |
Jabba | 202980 | 1087.2 | 202879 | 1086.6 | 30141 | 7847 | 95.627 | 99.9832 | 00:38:30 | 00:04:57 | 21.4 |
LoRDEC | 238847 | 1405.0 | 237278 | 1297.1 | 34896 | 8326 | 99.978 | 97.9568 | 01:10:03 | 00:57:17 | 1.9 |
ECTools | 130863 | 946.9 | 130832 | 943.1 | 28749 | 8412 | 99.810 | 99.7712 | 938:25:28 | 58:25:00 | 4.3 |
Short-read-alignment-based methods | |||||||||||
Hercules | 239389 | 1460.3 | 235630 | 1330.4 | 35196 | 8644 | 99.976 | 87.6711 | 87:53:55 | 03:18:41 | 247.8 |
CoLoRMap | 239309 | 1429.6 | 237135 | 1321.3 | 34850 | 8409 | 99.976 | 96.3912 | 18:44:48 | 03:07:34 | 37.3 |
Nanocorr | - | - | - | - | - | - | - | - | - | >72:00:00 | - |
proovread | 238992 | 1412.4 | 236519 | 1298.0 | 35122 | 8369 | 99.978 | 97.9568 | 184:02:07 | 23:45:37 | 47.9 |
LSC | - | - | - | - | - | - | - | - | - | >72:00:00 | - |