From: A comprehensive evaluation of long read error correction methods
Method | # Reads | # Bases | # Aligned | # Aligned | Maximum | N50 | Genome | Alignment | CPU time | Wall time | Memory |
---|---|---|---|---|---|---|---|---|---|---|---|
 |  | (Mbp) | reads | bases (Mbp) | length (bp) | (bp) | fraction (%) | identity (%) | (hh:mm:ss) | (hh:mm:ss) | usage (GB) |
Original | 5366088 | 28797.8 | 1839681 | 16543.5 | 74735 | 15374 | 99.191 | 85.2734 | - | - | - |
Non-hybrid methods | |||||||||||
FLAS | 1435682 | 14585.2 | 1428018 | 13574.1 | 43556 | 13550 | 98.915 | 98.8363 | 271:44:27 | 36:30:42 | 53.1 |
LoRMA | - | - | - | - | - | - | - | - | - | - | - |
Canu | - | - | - | - | - | - | - | - | - | >72:00:00 | - |
Short-read-assembly-based methods | |||||||||||
HG-CoLoR | - | - | - | - | - | - | - | - | - | - | - |
FMLRC | 5246485 | 27354.6 | 2477890 | 16543.5 | 74735 | 14554 | 99.191 | 96.5284 | 327:37:22 | 13:49:04 | 31.2 |
HALC | 4451474 | 21997.5 | 3434779 | 12793.3 | 74735 | 14349 | 99.178 | 96.8863 | 770:35:46 | 55:58:24 | 73.0 |
Jabba | 35549 | 239.8 | 35505 | 239.1 | 37729 | 10461 | 65.616 | 99.9615 | 656:05:15 | 24:33:41 | 175.8 |
LoRDEC | 5363998 | 28354.1 | 2056812 | 15636.9 | 74719 | 15078 | 99.200 | 92.2954 | 1011:52:27 | 36:19:18 | 5.9 |
ECTools | - | - | - | - | - | - | - | - | - | >72:00:00 | - |
Short-read-alignment-based methods | |||||||||||
Hercules | - | - | - | - | - | - | - | - | - | - | - |
CoLoRMap | 5366107 | 28891.6 | 1841822 | 14976.8 | 74735 | 15442 | 99.189 | 83.2580 | 495:11:17 | 64:52:25 | 189.4 |
Nanocorr | - | - | - | - | - | - | - | - | - | >72:00:00 | - |
proovread | - | - | - | - | - | - | - | - | - | >72:00:00 | - |
LSC | - | - | - | - | - | - | - | - | - | >72:00:00 | - |