Skip to main content

Table 5 Experimental results for fruit fly PacBio data set D3-P

From: A comprehensive evaluation of long read error correction methods

Method

# Reads

# Bases

# Aligned

# Aligned

Maximum

N50

Genome

Alignment

CPU time

Wall time

Memory

  

(Mbp)

reads

bases (Mbp)

length (bp)

(bp)

fraction (%)

identity (%)

(hh:mm:ss)

(hh:mm:ss)

usage (GB)

Original

5366088

28797.8

1839681

16543.5

74735

15374

99.191

85.2734

-

-

-

Non-hybrid methods

FLAS

1435682

14585.2

1428018

13574.1

43556

13550

98.915

98.8363

271:44:27

36:30:42

53.1

LoRMA

-

-

-

-

-

-

-

-

-

-

-

Canu

-

-

-

-

-

-

-

-

-

>72:00:00

-

Short-read-assembly-based methods

HG-CoLoR

-

-

-

-

-

-

-

-

-

-

-

FMLRC

5246485

27354.6

2477890

16543.5

74735

14554

99.191

96.5284

327:37:22

13:49:04

31.2

HALC

4451474

21997.5

3434779

12793.3

74735

14349

99.178

96.8863

770:35:46

55:58:24

73.0

Jabba

35549

239.8

35505

239.1

37729

10461

65.616

99.9615

656:05:15

24:33:41

175.8

LoRDEC

5363998

28354.1

2056812

15636.9

74719

15078

99.200

92.2954

1011:52:27

36:19:18

5.9

ECTools

-

-

-

-

-

-

-

-

-

>72:00:00

-

Short-read-alignment-based methods

Hercules

-

-

-

-

-

-

-

-

-

-

-

CoLoRMap

5366107

28891.6

1841822

14976.8

74735

15442

99.189

83.2580

495:11:17

64:52:25

189.4

Nanocorr

-

-

-

-

-

-

-

-

-

>72:00:00

-

proovread

-

-

-

-

-

-

-

-

-

>72:00:00

-

LSC

-

-

-

-

-

-

-

-

-

>72:00:00

-

  1. Note: LoRMA, HG-CoLoR and Hercules reported errors when correcting this dataset