Skip to main content

Table 7 Results of genome assembly computed using corrected reads of D1-P

From: A comprehensive evaluation of long read error correction methods

Method

# contigs

NGA50

Largest

Total

Genome

#

#

# indels

# indels

Indel

  

(bp)

contigs (bp)

length (bp)

fraction (%)

misassemblies

mismatches

(<=5bp)

(>5bp)

length (bp)

Non-hybrid methods

FLAS

2

3996362

4681650

4689583

99.998

4

4

162

0

167

LoRMA

14

696878

2501146

4663900

99.938

4

75

4181

6

4295

Canu

1

3976437

4670120

4670120

99.998

4

7

92

0

95

Short-read-assembly-based methods

FMLRC

9

3821409

4657352

4831908

99.998

8

1

4

0

5

HALC

25

2947777

4682714

5388722

99.983

8

541

35

8

257

Jabba

58

138874

398327

4623296

97.273

1

172

32

3

167

LoRDEC

2

3996441

4681757

4703690

99.998

4

66

18

2

55

ECTools

19

3548731

4657296

5154324

99.974

4

592

80

2

188

Short-read-alignment-based methods

CoLoRMap

86

1217587

1448649

5700143

99.998

4

42

3

7

478

Nanocorr

18

3095077

4646253

4931697

99.998

5

65

34

2

157

proovread

2

1686030

4626702

4666724

99.656

4

76

97

1

176