Table 8 Results of genome assembly computed using corrected reads of D1-O
From: A comprehensive evaluation of long read error correction methods
Method | # contigs | NGA50 | Largest | Total | Genome | # | # | # indels | # indels | Indel |
|---|---|---|---|---|---|---|---|---|---|---|
| Â | Â | (bp) | contigs (bp) | length (bp) | fraction (%) | misassemblies | mismatches | (<=5bp) | (>5bp) | length (bp) |
Non-hybrid methods | ||||||||||
FLAS | 1 | 1283465 | 4561925 | 4561925 | 99.834 | 4 | 4785 | 70062 | 1310 | 122264 |
LoRMA | 14 | 726649 | 1239048 | 4583602 | 99.650 | 3 | 23275 | 57650 | 37 | 73578 |
Canu | 1 | 3335496 | 4601279 | 4601279 | 99.914 | 2 | 14810 | 56511 | 283 | 78931 |
Short-read-assembly-based methods | ||||||||||
HG-CoLoR | 32 | 3924167 | 4634988 | 5555776 | 99.845 | 28 | 393 | 82 | 8 | 246 |
FMLRC | 9 | 4325756 | 4718452 | 4974808 | 99.874 | 6 | 6 | 7 | 4 | 242 |
Jabba | 57 | 105474 | 311624 | 4460218 | 95.838 | 0 | 117 | 22 | 5 | 179 |
LoRDEC | 57 | 3492326 | 4044623 | 5389657 | 99.800 | 10 | 402 | 162 | 18 | 448 |
ECTools | 2 | 2891718 | 4733248 | 4797686 | 99.885 | 3 | 632 | 267 | 16 | 682 |
Short-read-alignment-based methods | ||||||||||
CoLoRMap | 55 | 206971 | 501963 | 6007440 | 94.790 | 4 | 11074 | 14392 | 206 | 24183 |
proovread | 99 | 75162 | 225568 | 4613429 | 98.737 | 14 | 276 | 41 | 1 | 75 |