A comprehensive evaluation of long read error correction methods

BMC Genomics

Table 9 Details of the benchmark data sets

Data	Sequencing	Sequencing	Sequencing	Read length	Number of	Reference	Genome	Reference
set	specification	NCBI accession	depth ^a	(bp) ^b	reads	genome	length (Mbp)	NCBI accession
D1-I	Illumina Miseq	- ^c	373x	2 ×151	2 ×5 729 470	E. coli K-12 MG1655		NC_000913.3
D1-P	Pacbio P6C4	- ^d	161x	13 982	87 217		4.6
D1-O	MinION R9 1D	- ^e	319x	14 891	164 472
D2-I	Illumina Miseq	ERR1938683	81x	2 ×150	2 ×3 318 467	S. cerevisiae S288c		GCF_000146045.2
D2-P	Pacbio P6C4	PRJEB7245	120x	8 656	239 408		12.2
D2-O	MinION R9 2D	ERP016443	59x	7 001	119 955
D3-I	Illumina Nextseq	SRX3676782	44x	2 ×151	2 ×20 619 401	D. melanogaster ISO1		GCF_000001215.4
D3-P	Pacbio P5C3	SRX499318	204x	15 132	6 864 972		143.7
D3-O	MinION R9.5 1D	SRX3676783	32x	11 934	663 784

ISSN: 1471-2164