TY - JOUR AU - Martin, P. PY - 1997 DA - 1997// TI - Wound healing--aiming for perfect skin regeneration JO - Science. VL - 276 UR - https://doi.org/10.1126/science.276.5309.75 DO - 10.1126/science.276.5309.75 ID - Martin1997 ER - TY - JOUR AU - Hirsch, T. AU - Rothoeft, T. AU - Teig, N. AU - Bauer, J. W. AU - Pellegrini, G. AU - Rosa, L. PY - 2017 DA - 2017// TI - Regeneration of the entire human epidermis using transgenic stem cells JO - Nature. VL - 551 UR - https://doi.org/10.1038/nature24487 DO - 10.1038/nature24487 ID - Hirsch2017 ER - TY - JOUR AU - Carlson, B. M. PY - 1973 DA - 1973// TI - The regeneration of skeletal muscle — a review JO - American Journal of Anatomy VL - 137 UR - https://doi.org/10.1002/aja.1001370202 DO - 10.1002/aja.1001370202 ID - Carlson1973 ER - TY - JOUR AU - Tedesco, F. S. AU - Dellavalle, A. AU - Diaz-Manera, J. AU - Messina, G. AU - Cossu, G. PY - 2010 DA - 2010// TI - Repairing skeletal muscle: regenerative potential of skeletal muscle stem cells JO - J Clin Invest VL - 120 UR - https://doi.org/10.1172/JCI40373 DO - 10.1172/JCI40373 ID - Tedesco2010 ER - TY - JOUR AU - Michalopoulos, G. K. AU - DeFrances, M. C. PY - 1997 DA - 1997// TI - Liver regeneration JO - Science. VL - 276 UR - https://doi.org/10.1126/science.276.5309.60 DO - 10.1126/science.276.5309.60 ID - Michalopoulos1997 ER - TY - JOUR AU - Alwayn, I. P. J. AU - Verbesey, J. E. AU - Kim, S. AU - Roy, R. AU - Arsenault, D. A. AU - Greene, A. K. PY - 2008 DA - 2008// TI - A critical role for matrix metalloproteinases in liver regeneration JO - J Surg Res VL - 145 UR - https://doi.org/10.1016/j.jss.2007.04.002 DO - 10.1016/j.jss.2007.04.002 ID - Alwayn2008 ER - TY - JOUR AU - Brösamle, C. AU - Schwab, M. E. PY - 1996 DA - 1996// TI - Axonal regeneration in the mammalian CNS JO - Semin Neurosci VL - 8 UR - https://doi.org/10.1006/smns.1996.0014 DO - 10.1006/smns.1996.0014 ID - Brösamle1996 ER - TY - JOUR AU - Nicholls, J. G. AU - Frs, A. W. B. AU - Eugenin, J. AU - Geiser, R. AU - Lepre, M. PY - 1999 DA - 1999// TI - Why does the central nervous system not regenerate after injury? JO - Surv Ophthalmol VL - 43 UR - https://doi.org/10.1016/S0039-6257(99)00008-9 DO - 10.1016/S0039-6257(99)00008-9 ID - Nicholls1999 ER - TY - JOUR AU - Bradke, F. AU - Fawcett, J. W. AU - Spira, M. E. PY - 2012 DA - 2012// TI - Assembly of a new growth cone after axotomy: the precursor to axon regeneration JO - Nat Rev Neurosci VL - 13 UR - https://doi.org/10.1038/nrn3176 DO - 10.1038/nrn3176 ID - Bradke2012 ER - TY - JOUR AU - Lyons, D. A. AU - Talbot, W. S. PY - 2015 DA - 2015// TI - Glial cell development and function in Zebrafish JO - Cold Spring Harb Perspect Biol VL - 7 UR - https://doi.org/10.1101/cshperspect.a020586 DO - 10.1101/cshperspect.a020586 ID - Lyons2015 ER - TY - JOUR AU - Zhou, B. AU - Yu, P. AU - Lin, M. -. Y. AU - Sun, T. AU - Chen, Y. AU - Sheng, Z. -. H. PY - 2016 DA - 2016// TI - Facilitation of axon regeneration by enhancing mitochondrial transport and rescuing energy deficits JO - J Cell Biol VL - 214 UR - https://doi.org/10.1083/jcb.201605101 DO - 10.1083/jcb.201605101 ID - Zhou2016 ER - TY - JOUR AU - Wan, J. AU - Goldman, D. PY - 2016 DA - 2016// TI - Retina regeneration in zebrafish JO - Curr Opin Genet Dev VL - 40 UR - https://doi.org/10.1016/j.gde.2016.05.009 DO - 10.1016/j.gde.2016.05.009 ID - Wan2016 ER - TY - JOUR AU - Mensinger, A. F. AU - Powers, M. K. PY - 1999 DA - 1999// TI - Visual function in regenerating teleost retina following cytotoxic lesioning JO - Vis Neurosci VL - 16 UR - https://doi.org/10.1017/S0952523899162059 DO - 10.1017/S0952523899162059 ID - Mensinger1999 ER - TY - JOUR AU - Hitchcock, P. AU - Ochocinska, M. AU - Sieh, A. AU - Otteson, D. PY - 2004 DA - 2004// TI - Persistent and injury-induced neurogenesis in the vertebrate retina JO - Prog Retin Eye Res VL - 23 UR - https://doi.org/10.1016/j.preteyeres.2004.01.001 DO - 10.1016/j.preteyeres.2004.01.001 ID - Hitchcock2004 ER - TY - JOUR AU - Montgomery, J. E. AU - Parsons, M. J. AU - Hyde, D. R. PY - 2010 DA - 2010// TI - A novel model of retinal ablation demonstrates that the extent of rod cell death regulates the origin of the regenerated zebrafish rod photoreceptors JO - J Comp Neurol VL - 518 UR - https://doi.org/10.1002/cne.22243 DO - 10.1002/cne.22243 ID - Montgomery2010 ER - TY - JOUR AU - Chablais, F. AU - Veit, J. AU - Rainer, G. AU - Jaźwińska, A. PY - 2011 DA - 2011// TI - The zebrafish heart regenerates after cryoinjury-induced myocardial infarction JO - BMC Dev Biol VL - 11 UR - https://doi.org/10.1186/1471-213X-11-21 DO - 10.1186/1471-213X-11-21 ID - Chablais2011 ER - TY - JOUR AU - Kizil, C. AU - Kaslin, J. AU - Kroehne, V. AU - Brand, M. PY - 2012 DA - 2012// TI - Adult neurogenesis and brain regeneration in zebrafish JO - Developmental Neurobiology VL - 72 UR - https://doi.org/10.1002/dneu.20918 DO - 10.1002/dneu.20918 ID - Kizil2012 ER - TY - JOUR AU - Gemberling, M. AU - Bailey, T. J. AU - Hyde, D. R. AU - Poss, K. D. PY - 2013 DA - 2013// TI - The zebrafish as a model for complex tissue regeneration JO - Trends Genet VL - 29 UR - https://doi.org/10.1016/j.tig.2013.07.003 DO - 10.1016/j.tig.2013.07.003 ID - Gemberling2013 ER - TY - JOUR AU - Wan, J. AU - Zhao, X. -. F. AU - Vojtek, A. AU - Goldman, D. PY - 2014 DA - 2014// TI - Retinal injury, growth factors, and cytokines converge on β-catenin and pStat3 signaling to stimulate retina regeneration JO - Cell Rep VL - 9 UR - https://doi.org/10.1016/j.celrep.2014.08.048 DO - 10.1016/j.celrep.2014.08.048 ID - Wan2014 ER - TY - JOUR AU - McGinn, T. E. AU - Mitchell, D. M. AU - Meighan, P. C. AU - Partington, N. AU - Leoni, D. C. AU - Jenkins, C. E. PY - 2018 DA - 2018// TI - Restoration of dendritic complexity, functional connectivity, and diversity of regenerated retinal bipolar neurons in adult Zebrafish JO - J Neurosci VL - 38 UR - https://doi.org/10.1523/JNEUROSCI.3444-16.2017 DO - 10.1523/JNEUROSCI.3444-16.2017 ID - McGinn2018 ER - TY - JOUR AU - Caplan, A. I. PY - 2007 DA - 2007// TI - Adult mesenchymal stem cells for tissue engineering versus regenerative medicine JO - J Cell Physiol VL - 213 UR - https://doi.org/10.1002/jcp.21200 DO - 10.1002/jcp.21200 ID - Caplan2007 ER - TY - JOUR AU - Segawa, M. AU - Fukada, S. AU - Yamamoto, Y. AU - Yahagi, H. AU - Kanematsu, M. AU - Sato, M. PY - 2008 DA - 2008// TI - Suppression of macrophage functions impairs skeletal muscle regeneration with severe fibrosis JO - Exp Cell Res VL - 314 UR - https://doi.org/10.1016/j.yexcr.2008.08.008 DO - 10.1016/j.yexcr.2008.08.008 ID - Segawa2008 ER - TY - JOUR AU - Lu, H. AU - Huang, D. AU - Saederup, N. AU - Charo, I. F. AU - Ransohoff, R. M. AU - Zhou, L. PY - 2010 DA - 2010// TI - Macrophages recruited via CCR2 produce insulin-like growth factor-1 to repair acute skeletal muscle injury JO - FASEB J VL - 25 UR - https://doi.org/10.1096/fj.10-171579 DO - 10.1096/fj.10-171579 ID - Lu2010 ER - TY - JOUR AU - Godwin, J. W. AU - Pinto, A. R. AU - Rosenthal, N. A. PY - 2017 DA - 2017// TI - Chasing the recipe for a pro-regenerative immune system JO - Semin Cell Dev Biol VL - 61 UR - https://doi.org/10.1016/j.semcdb.2016.08.008 DO - 10.1016/j.semcdb.2016.08.008 ID - Godwin2017 ER - TY - JOUR AU - Petrie, T. A. AU - Strand, N. S. AU - Tsung-Yang, C. AU - Rabinowitz, J. S. AU - Moon, R. T. PY - 2014 DA - 2014// TI - Macrophages modulate adult zebrafish tail fin regeneration JO - Development. VL - 141 UR - https://doi.org/10.1242/dev.098459 DO - 10.1242/dev.098459 ID - Petrie2014 ER - TY - JOUR AU - Wynn, T. A. AU - Vannella, K. M. PY - 2016 DA - 2016// TI - Macrophages in tissue repair, regeneration, and fibrosis JO - Immunity. VL - 44 UR - https://doi.org/10.1016/j.immuni.2016.02.015 DO - 10.1016/j.immuni.2016.02.015 ID - Wynn2016 ER - TY - JOUR AU - Simkin, J. AU - Gawriluk, T. R. AU - Gensel, J. C. AU - Seifert, A. W. PY - 2017 DA - 2017// TI - Macrophages are necessary for epimorphic regeneration in African spiny mice JO - eLife. VL - 6 UR - https://doi.org/10.7554/eLife.24623 DO - 10.7554/eLife.24623 ID - Simkin2017 ER - TY - JOUR AU - Simkin, J. AU - Sammarco, M. C. AU - Marrero, L. AU - Dawson, L. A. AU - Yan, M. AU - Tucker, C. PY - 2017 DA - 2017// TI - Macrophages are required to coordinate mouse digit tip regeneration JO - Development. VL - 144 UR - https://doi.org/10.1242/dev.150086 DO - 10.1242/dev.150086 ID - Simkin2017 ER - TY - STD TI - Dort J, Fabre P, Molina T, Dumont NA. Macrophages are key regulators of stem cells during skeletal muscle regeneration and diseases. Stem Cells Int. 2019. https://doi.org/10.1155/2019/4761427. ID - ref29 ER - TY - JOUR AU - Mitchell, D. M. AU - Sun, C. AU - Hunter, S. S. AU - New, D. D. AU - Stenkamp, D. L. PY - 2019 DA - 2019// TI - Regeneration associated transcriptional signature of retinal microglia and macrophages JO - Sci Rep VL - 9 UR - https://doi.org/10.1038/s41598-018-37186-2 DO - 10.1038/s41598-018-37186-2 ID - Mitchell2019 ER - TY - JOUR AU - Kreutzberg, G. W. PY - 1996 DA - 1996// TI - Microglia: a sensor for pathological events in the CNS JO - Trends Neurosci VL - 19 UR - https://doi.org/10.1016/0166-2236(96)10049-7 DO - 10.1016/0166-2236(96)10049-7 ID - Kreutzberg1996 ER - TY - JOUR AU - Stollg, G. AU - Jander, S. PY - 1999 DA - 1999// TI - The role of microglia and macrophages in the pathophysiology of the CNS JO - Prog Neurobiol VL - 58 UR - https://doi.org/10.1016/S0301-0082(98)00083-5 DO - 10.1016/S0301-0082(98)00083-5 ID - Stollg1999 ER - TY - JOUR AU - Baumann, N. AU - Pham-Dinh, D. PY - 2001 DA - 2001// TI - Biology of Oligodendrocyte and myelin in the mammalian central nervous system JO - Physiol Rev VL - 81 UR - https://doi.org/10.1152/physrev.2001.81.2.871 DO - 10.1152/physrev.2001.81.2.871 ID - Baumann2001 ER - TY - JOUR AU - Nakajima, K. AU - Kohsaka, S. PY - 2001 DA - 2001// TI - Microglia: activation and their significance in the central nervous system JO - J Biochem VL - 130 UR - https://doi.org/10.1093/oxfordjournals.jbchem.a002969 DO - 10.1093/oxfordjournals.jbchem.a002969 ID - Nakajima2001 ER - TY - JOUR AU - Katsumoto, A. AU - Lu, H. AU - Miranda, A. S. AU - Ransohoff, R. M. PY - 2014 DA - 2014// TI - Ontogeny and functions of central nervous system macrophages JO - J Immunol VL - 193 UR - https://doi.org/10.4049/jimmunol.1400716 DO - 10.4049/jimmunol.1400716 ID - Katsumoto2014 ER - TY - JOUR AU - Bernardos, R. L. AU - Barthel, L. K. AU - Meyers, J. R. AU - Raymond, P. A. PY - 2007 DA - 2007// TI - Late-stage neuronal progenitors in the retina are radial Müller glia that function as retinal stem cells JO - J Neurosci VL - 27 UR - https://doi.org/10.1523/JNEUROSCI.1624-07.2007 DO - 10.1523/JNEUROSCI.1624-07.2007 ID - Bernardos2007 ER - TY - JOUR AU - Fausett, B. V. AU - Goldman, D. PY - 2006 DA - 2006// TI - A role for α1 tubulin-expressing Müller glia in regeneration of the injured Zebrafish retina JO - J Neurosci VL - 26 UR - https://doi.org/10.1523/JNEUROSCI.0332-06.2006 DO - 10.1523/JNEUROSCI.0332-06.2006 ID - Fausett2006 ER - TY - JOUR AU - Bringmann, A. AU - Pannicke, T. AU - Grosche, J. AU - Francke, M. AU - Wiedemann, P. AU - Skatchkov, S. N. PY - 2006 DA - 2006// TI - Müller cells in the healthy and diseased retina JO - Prog Retin Eye Res VL - 25 UR - https://doi.org/10.1016/j.preteyeres.2006.05.003 DO - 10.1016/j.preteyeres.2006.05.003 ID - Bringmann2006 ER - TY - JOUR AU - Fimbel, S. M. AU - Montgomery, J. E. AU - Burket, C. T. AU - Hyde, D. R. PY - 2007 DA - 2007// TI - Regeneration of inner retinal neurons after Intravitreal injection of Ouabain in Zebrafish JO - J Neurosci VL - 27 UR - https://doi.org/10.1523/JNEUROSCI.5317-06.2007 DO - 10.1523/JNEUROSCI.5317-06.2007 ID - Fimbel2007 ER - TY - JOUR AU - Ramachandran, R. AU - Fausett, B. V. AU - Goldman, D. PY - 2010 DA - 2010// TI - Ascl1a regulates Müller glia dedifferentiation and retinal regeneration through a Lin-28-dependent, let-7 microRNA signalling pathway JO - Nat Cell Biol VL - 12 UR - https://doi.org/10.1038/ncb2115 DO - 10.1038/ncb2115 ID - Ramachandran2010 ER - TY - JOUR AU - Nagashima, M. AU - Barthel, L. K. AU - Raymond, P. A. PY - 2013 DA - 2013// TI - A self-renewing division of zebrafish Müller glial cells generates neuronal progenitors that require N-cadherin to regenerate retinal neurons JO - Development. VL - 140 UR - https://doi.org/10.1242/dev.090738 DO - 10.1242/dev.090738 ID - Nagashima2013 ER - TY - STD TI - Hamon A, Roger JE, Yang X-J, Perron M. Müller glial cell-dependent regeneration of the neural retina: An overview across vertebrate model systems. Developmental Dynamics. 2018:727–38. ID - ref42 ER - TY - JOUR AU - Wang, M. AU - Ma, W. AU - Zhao, L. AU - Fariss, R. N. AU - Wong, W. T. PY - 2011 DA - 2011// TI - Adaptive Müller cell responses to microglial activation mediate neuroprotection and coordinate inflammation in the retina JO - J Neuroinflammation VL - 8 UR - https://doi.org/10.1186/1742-2094-8-173 DO - 10.1186/1742-2094-8-173 ID - Wang2011 ER - TY - JOUR AU - Fischer, A. J. AU - Zelinka, C. AU - Gallina, D. AU - Scott, M. A. AU - Todd, L. PY - 2014 DA - 2014// TI - Reactive microglia and macrophage facilitate the formation of Müller glia-derived retinal progenitors JO - Glia. VL - 62 UR - https://doi.org/10.1002/glia.22703 DO - 10.1002/glia.22703 ID - Fischer2014 ER - TY - JOUR AU - Conedera, F. M. AU - Pousa, A. M. Q. AU - Mercader, N. AU - Tschopp, M. AU - Enzmann, V. PY - 2019 DA - 2019// TI - Retinal microglia signaling affects Müller cell behavior in the zebrafish following laser injury induction JO - Glia. VL - 67 UR - https://doi.org/10.1002/glia.23601 DO - 10.1002/glia.23601 ID - Conedera2019 ER - TY - JOUR AU - Huang, T. AU - Cui, J. AU - Li, L. AU - Hitchcock, P. F. AU - Li, Y. PY - 2012 DA - 2012// TI - The role of microglia in the neurogenesis of zebrafish retina JO - Biochem Biophys Res Commun VL - 421 UR - https://doi.org/10.1016/j.bbrc.2012.03.139 DO - 10.1016/j.bbrc.2012.03.139 ID - Huang2012 ER - TY - JOUR AU - Sieger, D. AU - Peri, F. PY - 2013 DA - 2013// TI - Animal models for studying microglia: the first, the popular, and the new JO - Glia. VL - 61 UR - https://doi.org/10.1002/glia.22385 DO - 10.1002/glia.22385 ID - Sieger2013 ER - TY - JOUR AU - Casano, A. M. AU - Peri, F. PY - 2015 DA - 2015// TI - Microglia: multitasking specialists of the brain JO - Dev Cell VL - 32 UR - https://doi.org/10.1016/j.devcel.2015.01.018 DO - 10.1016/j.devcel.2015.01.018 ID - Casano2015 ER - TY - JOUR AU - Casano, A. M. AU - Albert, M. AU - Peri, F. PY - 2016 DA - 2016// TI - Developmental apoptosis mediates entry and positioning of microglia in the Zebrafish brain JO - Cell Rep VL - 16 UR - https://doi.org/10.1016/j.celrep.2016.06.033 DO - 10.1016/j.celrep.2016.06.033 ID - Casano2016 ER - TY - JOUR AU - Hamilton, L. AU - Astell, K. R. AU - Velikova, G. AU - Sieger, D. PY - 2016 DA - 2016// TI - A Zebrafish live imaging model reveals differential responses of microglia toward Glioblastoma cells in vivo JO - Zebrafish. VL - 13 UR - https://doi.org/10.1089/zeb.2016.1339 DO - 10.1089/zeb.2016.1339 ID - Hamilton2016 ER - TY - JOUR AU - Mitchell, D. M. AU - Lovel, A. G. AU - Stenkamp, D. L. PY - 2018 DA - 2018// TI - Dynamic changes in microglial and macrophage characteristics during degeneration and regeneration of the zebrafish retina JO - J Neuroinflammation VL - 15 UR - https://doi.org/10.1186/s12974-018-1185-6 DO - 10.1186/s12974-018-1185-6 ID - Mitchell2018 ER - TY - JOUR AU - Oosterhof, N. AU - Holtman, I. R. AU - Kuil, L. E. AU - Linde, H. C. AU - Boddeke, E. W. G. M. AU - Eggen, B. J. L. PY - 2017 DA - 2017// TI - Identification of a conserved and acute neurodegeneration-specific microglial transcriptome in the zebrafish JO - Glia. VL - 65 UR - https://doi.org/10.1002/glia.23083 DO - 10.1002/glia.23083 ID - Oosterhof2017 ER - TY - JOUR AU - Ruzicka, L. AU - Bradford, Y. M. AU - Frazer, K. AU - Howe, D. G. AU - Paddock, H. AU - Ramachandran, S. PY - 2015 DA - 2015// TI - ZFIN, The zebrafish model organism database: Updates and new directions JO - Genesis VL - 53 UR - https://doi.org/10.1002/dvg.22868 DO - 10.1002/dvg.22868 ID - Ruzicka2015 ER - TY - JOUR AU - Hubbard, T. AU - Barker, D. AU - Birney, E. AU - Cameron, G. AU - Chen, Y. AU - Clark, L. PY - 2002 DA - 2002// TI - The Ensembl genome database project JO - Nucleic Acids Res VL - 30 UR - https://doi.org/10.1093/nar/30.1.38 DO - 10.1093/nar/30.1.38 ID - Hubbard2002 ER - TY - JOUR AU - Huerta-Cepas, J. AU - Szklarczyk, D. AU - Forslund, K. AU - Cook, H. AU - Heller, D. AU - Walter, M. C. PY - 2016 DA - 2016// TI - eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences JO - Nucleic Acids Res VL - 44 UR - https://doi.org/10.1093/nar/gkv1248 DO - 10.1093/nar/gkv1248 ID - Huerta-Cepas2016 ER - TY - JOUR AU - Lee, R. AU - Buljan, M. AU - Lang, B. AU - Weatheritt, R. J. AU - Daughdrill, G. W. AU - Dunker, A. K. PY - 2014 DA - 2014// TI - Classification of intrinsically disordered regions and proteins JO - Chem Rev VL - 114 UR - https://doi.org/10.1021/cr400525m DO - 10.1021/cr400525m ID - Lee2014 ER - TY - JOUR AU - Waterhouse, A. AU - Bertoni, M. AU - Bienert, S. AU - Studer, G. AU - Tauriello, G. AU - Gumienny, R. PY - 2018 DA - 2018// TI - SWISS-MODEL: homology modelling of protein structures and complexes JO - Nucleic Acids Res VL - 46 UR - https://doi.org/10.1093/nar/gky427 DO - 10.1093/nar/gky427 ID - Waterhouse2018 ER - TY - JOUR AU - Biasini, M. AU - Bienert, S. AU - Waterhouse, A. AU - Arnold, K. AU - Studer, G. AU - Schmidt, T. PY - 2014 DA - 2014// TI - SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information JO - Nucleic Acids Res VL - 42 UR - https://doi.org/10.1093/nar/gku340 DO - 10.1093/nar/gku340 ID - Biasini2014 ER - TY - JOUR AU - Rose, P. W. AU - Bi, C. AU - Bluhm, W. F. AU - Christie, C. H. AU - Dimitropoulos, D. AU - Dutta, S. PY - 2013 DA - 2013// TI - The RCSB protein data Bank: new resources for research and education JO - Nucleic Acids Res VL - 41 UR - https://doi.org/10.1093/nar/gks1200 DO - 10.1093/nar/gks1200 ID - Rose2013 ER - TY - JOUR AU - Hrdinka, M. AU - Schlicher, L. AU - Dai, B. AU - Pinkas, D. M. AU - Bufton, J. C. AU - Picaud, S. PY - 2018 DA - 2018// TI - Small molecule inhibitors reveal an indispensable scaffolding role of RIPK2 in NOD2 signaling JO - EMBO J VL - 37 UR - https://doi.org/10.15252/embj.201899372 DO - 10.15252/embj.201899372 ID - Hrdinka2018 ER - TY - JOUR AU - Pang, S. S. AU - Berry, R. AU - Chen, Z. AU - Kjer-Nielsen, L. AU - Perugini, M. A. AU - King, G. F. PY - 2010 DA - 2010// TI - The structural basis for autonomous dimerization of the pre-T-cell antigen receptor JO - Nature. VL - 467 UR - https://doi.org/10.1038/nature09448 DO - 10.1038/nature09448 ID - Pang2010 ER - TY - JOUR AU - Kuloǧlu, E. S. AU - McCaslin, D. R. AU - Kitabwalla, M. AU - Pauza, C. D. AU - Markley, J. L. AU - Volkman, B. F. PY - 2001 DA - 2001// TI - Monomeric solution structure of the prototypical ‘C’ chemokine Lymphotactin JO - Biochemistry. VL - 40 UR - https://doi.org/10.1021/bi011106p DO - 10.1021/bi011106p ID - Kuloǧlu2001 ER - TY - JOUR AU - Ren, L. AU - Qin, X. AU - Cao, X. AU - Wang, L. AU - Bai, F. AU - Bai, G. PY - 2011 DA - 2011// TI - Structural insight into substrate specificity of human intestinal maltase-glucoamylase JO - Protein Cell VL - 2 UR - https://doi.org/10.1007/s13238-011-1105-3 DO - 10.1007/s13238-011-1105-3 ID - Ren2011 ER - TY - JOUR AU - Goldman, J. A. AU - Kuzu, G. AU - Lee, N. AU - Karasik, J. AU - Gemberling, M. AU - Foglia, M. J. PY - 2017 DA - 2017// TI - Resolving Heart Regeneration by Replacement Histone Profiling JO - Developmental Cell VL - 40 UR - https://doi.org/10.1016/j.devcel.2017.01.013 DO - 10.1016/j.devcel.2017.01.013 ID - Goldman2017 ER - TY - JOUR AU - Nieto-Arellano, R. AU - Sánchez-Iranzo, H. PY - 2019 DA - 2019// TI - zfRegeneration: a database for gene expression profiling during regeneration JO - Bioinformatics. VL - 35 UR - https://doi.org/10.1093/bioinformatics/bty659 DO - 10.1093/bioinformatics/bty659 ID - Nieto-Arellano2019 ER - TY - JOUR AU - Bouchier-Hayes, L. AU - Martin, S. J. PY - 2002 DA - 2002// TI - CARD games in apoptosis and immunity JO - EMBO Rep VL - 3 UR - https://doi.org/10.1093/embo-reports/kvf139 DO - 10.1093/embo-reports/kvf139 ID - Bouchier-Hayes2002 ER - TY - JOUR AU - Ludwig-Galezowska, A. H. AU - Flanagan, L. AU - Rehm, M. PY - 2011 DA - 2011// TI - Apoptosis repressor with caspase recruitment domain, a multifunctional modulator of cell death JO - J Cell Mol Med VL - 15 UR - https://doi.org/10.1111/j.1582-4934.2010.01221.x DO - 10.1111/j.1582-4934.2010.01221.x ID - Ludwig-Galezowska2011 ER - TY - JOUR AU - Martinon, F. AU - Tschopp, J. PY - 2004 DA - 2004// TI - Inflammatory Caspases: linking an intracellular innate immune system to autoinflammatory diseases JO - Cell. VL - 117 UR - https://doi.org/10.1016/j.cell.2004.05.004 DO - 10.1016/j.cell.2004.05.004 ID - Martinon2004 ER - TY - JOUR AU - Hruz, P. AU - Eckmann, L. PY - 2008 DA - 2008// TI - Caspase recruitment domain-containing sensors and adaptors in intestinal innate immunity JO - Curr Opin Gastroenterol VL - 24 UR - https://doi.org/10.1097/MOG.0b013e3282f50fdf DO - 10.1097/MOG.0b013e3282f50fdf ID - Hruz2008 ER - TY - JOUR AU - Inohara, N. AU - Peso, L. AU - Koseki, T. AU - Chen, S. AU - Núñez, G. PY - 1998 DA - 1998// TI - RICK, a novel protein kinase containing a Caspase recruitment domain, interacts with CLARP and regulates CD95-mediated apoptosis JO - J Biol Chem VL - 273 UR - https://doi.org/10.1074/jbc.273.20.12296 DO - 10.1074/jbc.273.20.12296 ID - Inohara1998 ER - TY - JOUR AU - McCarthy, J. V. AU - Ni, J. AU - Dixit, V. M. PY - 1998 DA - 1998// TI - RIP2 is a novel NF-κB-activating and cell death-inducing kinase JO - J Biol Chem VL - 273 UR - https://doi.org/10.1074/jbc.273.27.16968 DO - 10.1074/jbc.273.27.16968 ID - McCarthy1998 ER - TY - JOUR AU - Thome, M. AU - Hofmann, K. AU - Burns, K. AU - Martinon, F. AU - Bodmer, J. -. L. AU - Mattmann, C. PY - 1998 DA - 1998// TI - Identification of CARDIAK, a RIP-like kinase that associates with caspase-1 JO - Curr Biol VL - 8 UR - https://doi.org/10.1016/S0960-9822(07)00352-1 DO - 10.1016/S0960-9822(07)00352-1 ID - Thome1998 ER - TY - JOUR AU - Manon, F. AU - Favier, A. AU - Núñez, G. AU - Simorre, J. -. P. AU - Cusack, S. PY - 2007 DA - 2007// TI - Solution structure of NOD1 CARD and mutational analysis of its interaction with the CARD of downstream kinase RICK JO - J Mol Biol VL - 365 UR - https://doi.org/10.1016/j.jmb.2006.09.067 DO - 10.1016/j.jmb.2006.09.067 ID - Manon2007 ER - TY - JOUR AU - Gong, Q. AU - Long, Z. AU - Zhong, F. L. AU - Teo, D. E. T. AU - Jin, Y. AU - Yin, Z. PY - 2018 DA - 2018// TI - Structural basis of RIP2 activation and signaling JO - Nat Commun VL - 9 UR - https://doi.org/10.1038/s41467-017-02088-w DO - 10.1038/s41467-017-02088-w ID - Gong2018 ER - TY - JOUR AU - Brown, C. J. AU - Takayama, S. AU - Campen, A. M. AU - Vise, P. AU - Marshall, T. W. AU - Oldfield, C. J. PY - 2002 DA - 2002// TI - Evolutionary rate heterogeneity in proteins with long disordered regions JO - J Mol Evol VL - 55 UR - https://doi.org/10.1007/s00239-001-2309-6 DO - 10.1007/s00239-001-2309-6 ID - Brown2002 ER - TY - JOUR AU - Afanasyeva, A. AU - Bockwoldt, M. AU - Cooney, C. R. AU - Heiland, I. AU - Gossmann, T. I. PY - 2018 DA - 2018// TI - Human long intrinsically disordered protein regions are frequent targets of positive selection JO - Genome Res VL - 28 UR - https://doi.org/10.1101/gr.232645.117 DO - 10.1101/gr.232645.117 ID - Afanasyeva2018 ER - TY - JOUR AU - Fahmi, M. AU - Ito, M. PY - 2019 DA - 2019// TI - Evolutionary approach of intrinsically disordered CIP/KIP proteins JO - Sci Rep VL - 9 UR - https://doi.org/10.1038/s41598-018-37917-5 DO - 10.1038/s41598-018-37917-5 ID - Fahmi2019 ER - TY - STD TI - Forcelloni S, Giansanti A. Evolutionary forces on different flavors of intrinsic disorder in the human proteome. bioRxiv. 2019:653063. ID - ref78 ER - TY - JOUR AU - Russell, F. D. PY - 2008 DA - 2008// TI - Urotensin II in cardiovascular regulation JO - Vasc Health Risk Manag VL - 4 UR - https://doi.org/10.2147/VHRM.S1983 DO - 10.2147/VHRM.S1983 ID - Russell2008 ER - TY - STD TI - Debiec R, Christofidou P, Denniff M, Bloomer LD, Bogdanski P, Wojnar L, et al. Urotensin-II system in genetic control of blood pressure and renal function. PLoS One. 2013;8. https://doi.org/10.1371/journal.pone.0083137. ID - ref80 ER - TY - JOUR AU - Ames, R. S. AU - Sarau, H. M. AU - Chambers, J. K. AU - Willette, R. N. AU - Aiyar, N. V. AU - Romanic, A. M. PY - 1999 DA - 1999// TI - Human urotensin-II is a potent vasoconstrictor and agonist for the orphan receptor GPR14 JO - Nature. VL - 401 UR - https://doi.org/10.1038/45809 DO - 10.1038/45809 ID - Ames1999 ER - TY - JOUR AU - Poulsom, R. AU - Wright, N. A. PY - 1993 DA - 1993// TI - Trefoil peptides: a newly recognized family of epithelial mucin-associated molecules JO - Am J Physiology-Gastrointestinal and Liver Physiology VL - 265 UR - https://doi.org/10.1152/ajpgi.1993.265.2.G205 DO - 10.1152/ajpgi.1993.265.2.G205 ID - Poulsom1993 ER - TY - JOUR AU - Wong, W. M. AU - Poulsom, R. AU - Wright, N. A. PY - 1999 DA - 1999// TI - Trefoil peptides JO - Gut. VL - 44 UR - https://doi.org/10.1136/gut.44.6.890 DO - 10.1136/gut.44.6.890 ID - Wong1999 ER - TY - JOUR AU - Longman, R. J. AU - Douthwaite, J. AU - Sylvester, P. A. AU - Poulsom, R. AU - Corfield, A. P. AU - Thomas, M. G. PY - 2000 DA - 2000// TI - Coordinated localisation of mucins and trefoil peptides in the ulcer associated cell lineage and the gastrointestinal mucosa JO - Gut. VL - 47 UR - https://doi.org/10.1136/gut.47.6.792 DO - 10.1136/gut.47.6.792 ID - Longman2000 ER - TY - JOUR AU - Aihara, E. AU - Engevik, K. A. AU - Montrose, M. H. PY - 2017 DA - 2017// TI - Trefoil factor peptides and gastrointestinal function JO - Annu Rev Physiol VL - 79 UR - https://doi.org/10.1146/annurev-physiol-021115-105447 DO - 10.1146/annurev-physiol-021115-105447 ID - Aihara2017 ER - TY - STD TI - Behra M, Bradsher J, Sougrat R, Gallardo V, Allende ML, Burgess SM. Phoenix is required for Mechanosensory hair cell regeneration in the Zebrafish lateral line. PLoS Genet. 2009;5. https://doi.org/10.1371/journal.pgen.1000455. ID - ref86 ER - TY - STD TI - Rougeot J, Torraca V, Zakrzewska A, Kanwal Z, Jansen HJ, Sommer F, et al. RNAseq profiling of leukocyte populations in Zebrafish larvae reveals a cxcl11 chemokine gene as a marker of macrophage polarization during mycobacterial infection. Front Immunol. 2019;10. https://doi.org/10.3389/fimmu.2019.00832. ID - ref87 ER - TY - JOUR AU - Singh, U. AU - Syrkin, W. E. PY - 2020 DA - 2020// TI - How new genes are born JO - eLife. VL - 9 UR - https://doi.org/10.7554/eLife.55136 DO - 10.7554/eLife.55136 ID - Singh2020 ER - TY - JOUR AU - Apweiler, R. AU - Bairoch, A. AU - Wu, C. H. AU - Barker, W. C. AU - Boeckmann, B. AU - Ferro, S. PY - 2004 DA - 2004// TI - UniProt: the Universal Protein knowledgebase JO - Nucleic Acids Res VL - 32 UR - https://doi.org/10.1093/nar/gkh131 DO - 10.1093/nar/gkh131 ID - Apweiler2004 ER - TY - JOUR AU - Hunter, S. AU - Apweiler, R. AU - Attwood, T. K. AU - Bairoch, A. AU - Bateman, A. AU - Binns, D. PY - 2009 DA - 2009// TI - InterPro: the integrative protein signature database JO - Nucleic Acids Res VL - 37 UR - https://doi.org/10.1093/nar/gkn785 DO - 10.1093/nar/gkn785 ID - Hunter2009 ER - TY - JOUR AU - Pruitt, K. D. AU - Tatusova, T. AU - Maglott, D. R. PY - 2007 DA - 2007// TI - NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins JO - Nucleic Acids Res VL - 35 UR - https://doi.org/10.1093/nar/gkl842 DO - 10.1093/nar/gkl842 ID - Pruitt2007 ER - TY - JOUR AU - Ishida, T. AU - Kinoshita, K. PY - 2007 DA - 2007// TI - PrDOS: prediction of disordered protein regions from amino acid sequence JO - Nucleic Acids Res VL - 35 UR - https://doi.org/10.1093/nar/gkm363 DO - 10.1093/nar/gkm363 ID - Ishida2007 ER - TY - JOUR AU - Altschul, S. F. AU - Madden, T. L. AU - Schäffer, A. A. AU - Zhang, J. AU - Zhang, Z. AU - Miller, W. PY - 1997 DA - 1997// TI - Gapped BLAST and PSI-BLAST: a new generation of protein database search programs JO - Nucleic Acids Res VL - 25 UR - https://doi.org/10.1093/nar/25.17.3389 DO - 10.1093/nar/25.17.3389 ID - Altschul1997 ER -