Skip to main content

Table 6 Othologs found in the species Agmbystoma mexicanum, Xenopus laevis, Xenopus tropicalis and Cynops pyrrhogaster

From: Bioinformatic analysis and functional predictions of selected regeneration-associated transcripts expressed by zebrafish microglia

Gene IDa

Accession ID

Functionb

E Valuec

Query coverd

Identitye

Species

A. Ambystoma mexicanum

P1

AIW46262.1

Receptor tyrosine kinase-like orphan receptor 2

1.00e-09

40%

22.90%

Ambystoma mexicanum

B. Xenopus

P1

XP_018112660.1

Threonine-protein kinase 2-like isoform X1

3.00e-32

39%

32.24%

Xenopus laevis

P3

XP_004916146.1

Cell adhesion molecule 1 isoform X2

3.00e-02

56%

23.78%

Xenopus tropicalis

P5

XP_018101840.1

Uncharacterized protein

2.00e-32

58%

40.11%

Xenopus laevis

P8

XP_004919377.2

CD48 antigen

7.00e-08

99%

28.97%

Xenopus tropicalis

P9

KAE8621564.1

Hypothetical protein XENTR_v10004882

2.00e-06

23%

45.95%

Xenopus tropicalis

P10

XP_018120302.1

Cytokine SCM-1 beta-like

1.00e-07

64%

36.59%

Xenopus laevis

P11

XP_012818887.1

Sucrase-isomaltase, intestinal

0.00

99%

58.89%

Xenopus tropicalis

C. Cynops pyrrhogaster

P1

BAB44154.1

Insulin-like growth factor I receptor

2.00e-10

44%

23.17%

Cynops pyrrhogaster

  1. BLASTP BLOSUM45 was used to find distantly related proteins in the shown species
  2. aGene ID: Corresponds to the symbol used for each predicted zebrafish protein subjected to bioinformatics analysis, the query. Only those with hits are shown
  3. bFunction: Corresponds to the function associated with the ortholodg found for each gene
  4. cE Value: The Expect value (E-value) or random background noise is the number of hits one can “expect” to see by chance when searching a database of a particular size (https://blast.ncbi.nlm.nih.gov). The lower the E-value, or the closer it is to zero, the more “significant” the match is
  5. dQuery cover: The percentage of the query’s sequence (zebrafish gene) that overlaps the subject’s sequence (returned ortholog)
  6. eIdentity: The percentage of amino acids within the covered part of the query that are identical between the query and the returned ortholog