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Table 2 Genomic categories that are mapped by sRNA reads by EhAgo IP libraries

From: Identification of oligo-adenylated small RNAs in the parasite Entamoeba and a potential role for small RNA control

 

5′ P-independent cloning, α-Myc IP libraries

Categories

Myc-EhAgo2-1

Myc-EhAgo2-2

Myc-EhAgo2-3

Myc-EhAgo2-2â–³NLS-DR

Total reads

1,944,425

2,298,495

1,705,678

1,498,720

Unique (unique/total reads)

419,279 (21.6%)

599,121 (26.1%)

241,012 (14.1%)

391,003 (26.1%)

tRNAa,S

4,407 (1.0%)

4,944 (0.5%)

1,919 (0.4%)

2,028 (0.5%)

rRNAa,S

80,844 (19.3%)

79,488 (13.3%)

47,678 (19.8%)

14,344 (3.7%)

EhLINEsa,AS

41,713 (9.9%)

15,275 (2.5%)

16,306 (6.8%)

41,820 (10.7%)

Map to rest of genomea

230,334 (54.9%)

388,040 (64.8%)

139,897 (58.0%)

282,829 (72.3%)

Map to predicted ORFsa,AS

168,968 (40.3%)

284,402 (47.5%)

109,020 (45.2%)

213,451 (54.6%)

Not mapped to genome (%)

61,981 (14.8%)

111,374 (18.6%)

35,212 (14.6%)

49,982 (12.8%)

  1. a Number of unique reads divided by total unique reads
  2. S Most reads are in sense orientation
  3. AS Most reads are in antisense orientation