Table 2 Distribution of SNP panel loci, as computed in silico from the 37 re-sequenced whole genome sequences. Data are presented for all those loci in the panel, and again for only those loci for which SeqCap probes could be successfully designed. Further statistics can be found in the supplementary data (SNP_Targets_ponAbe3_bed_file.txt)

chr1

5344

107

4882

107

chr2A

4989

54

3946

54

chr2B

8403

65

6711

64

chr3

7120

72

5802

69

chr4

7090

56

5707

56

chr5

6948

55

5417

52

chr6

6655

59

5553

58

chr7

6024

58

4697

58

chr8

7199

47

5323

47

chr9

8111

66

6442

66

chr10

4992

66

4617

65

chr11

3566

50

3168

50

chr12

6049

60

4517

60

chr13

6695

22

4978

22

chr14

2835

35

2434

35

chr15

5829

46

4762

44

chr16

12,784

104

11,080

104

chr17

22,994

127

18,399

124

chr18

8720

22

7444

22

chr19

5976

71

4488

71

chr20

9660

50

8342

50

chr21

3610

27

3019

27

chr22

3751

32

3035

32

chrX

9782

16

6334

15

chrM

1

–

0

–

chrUn

59

8

59

8

Total

175,186

1375

141,156

1360