TY - JOUR AU - Spencer, G. E. AU - Kazmi, M. H. AU - Syed, N. I. AU - Lukowiak, K. PY - 2002 DA - 2002// TI - Changes in the activity of a CpG neuron after the reinforcement of an operantly conditioned behavior in Lymnaea JO - J Neurophysiol VL - 88 UR - https://doi.org/10.1152/jn.2002.88.4.1915 DO - 10.1152/jn.2002.88.4.1915 ID - Spencer2002 ER - TY - JOUR AU - Scheibenstock, A. AU - Krygier, D. AU - Haque, Z. AU - Syed, N. AU - Lukowiak, K. PY - 2002 DA - 2002// TI - The soma of RPeD1 must be present for long-term memory formation of associative learning in Lymnaea JO - J Neurophysiol VL - 88 UR - https://doi.org/10.1152/jn.2002.88.4.1584 DO - 10.1152/jn.2002.88.4.1584 ID - Scheibenstock2002 ER - TY - JOUR AU - Sunada, H. AU - Watanabe, T. AU - Hatakeyama, D. AU - Lee, S. AU - Forest, J. AU - Sakakibara, M. AU - Ito, E. AU - Lukowiak, K. PY - 2017 DA - 2017// TI - Pharmacological effects of cannabinoids on learning and memory in Lymnaea JO - J Exp Biol VL - 220 UR - https://doi.org/10.1242/jeb.159038 DO - 10.1242/jeb.159038 ID - Sunada2017 ER - TY - JOUR AU - Syed, N. AU - Bulloch, A. AU - Lukowiak, K. PY - 1990 DA - 1990// TI - In vitro reconstruction of the respiratory central pattern generator of the mollusk Lymnaea JO - Science VL - 250 UR - https://doi.org/10.1126/science.2218532 DO - 10.1126/science.2218532 ID - Syed1990 ER - TY - JOUR AU - Elliott, C. J. H. AU - Vehovszky, Á. PY - 2000 DA - 2000// TI - Polycyclic neuromodulation of the feeding rhythm of the pond snail Lymnaea stagnalis by the intrinsic octopaminergic interneuron, OC JO - Brain Res VL - 887 UR - https://doi.org/10.1016/S0006-8993(00)02968-1 DO - 10.1016/S0006-8993(00)02968-1 ID - Elliott2000 ER - TY - JOUR AU - Cheung, U. AU - Moghaddasi, M. AU - Hall, H. L. AU - Smith, J. J. B. AU - Buck, L. T. AU - Woodin, M. A. PY - 2006 DA - 2006// TI - Excitatory actions of GABA mediate severe-hypoxia-induced depression of neuronal activity in the pond snail (Lymnaea stagnalis) JO - J Exp Biol VL - 209 UR - https://doi.org/10.1242/jeb.02553 DO - 10.1242/jeb.02553 ID - Cheung2006 ER - TY - JOUR AU - Nejatbakhsh, N. AU - Guo, C. H. AU - Lu, T. Z. AU - Pei, L. AU - Smit, A. B. AU - Sun, H. S. AU - Kesteren, R. E. AU - Feng, Z. P. PY - 2011 DA - 2011// TI - Caltubin, a novel molluscan tubulin-interacting protein, promotes axonal growth and attenuates axonal degeneration of rodent neurons JO - J Neurosci VL - 31 UR - https://doi.org/10.1523/JNEUROSCI.2516-11.2011 DO - 10.1523/JNEUROSCI.2516-11.2011 ID - Nejatbakhsh2011 ER - TY - BOOK PY - 2016 DA - 2016// TI - Test No. 243: Lymnaea stagnalis Reproduction Test UR - https://doi.org/10.1787/9789264264335-en DO - 10.1787/9789264264335-en ID - ref8 ER - TY - JOUR AU - Niyogi, S. AU - Brix, K. V. AU - Grosell, M. PY - 2014 DA - 2014// TI - Effects of chronic waterborne nickel exposure on growth, ion homeostasis, acid-base balance, and nickel uptake in the freshwater pulmonate snail, Lymnaea stagnalis JO - Aquat Toxicol VL - 150 UR - https://doi.org/10.1016/j.aquatox.2014.02.012 DO - 10.1016/j.aquatox.2014.02.012 ID - Niyogi2014 ER - TY - JOUR AU - Crémazy, A. AU - Brix, K. V. AU - Wood, C. M. PY - 2018 DA - 2018// TI - Chronic toxicity of binary mixtures of six metals (Ag, cd, cu, Ni, Pb, and Zn) to the great pond snail Lymnaea stagnalis JO - Environ Sci Technol VL - 52 UR - https://doi.org/10.1021/acs.est.7b06554 DO - 10.1021/acs.est.7b06554 ID - Crémazy2018 ER - TY - JOUR AU - Mazur, R. AU - Shubiao, W. AU - Szoszkiewicz, K. AU - Bedla, D. AU - Nowak, A. AU - Mazur, R. AU - Shubiao, W. AU - Szoszkiewicz, K. AU - Bedla, D. AU - Nowak, A. PY - 2016 DA - 2016// TI - A Lymnaea stagnalis embryo test for toxicity bioindication of acidification and ammonia pollution in water JO - Water VL - 8 UR - https://doi.org/10.3390/w8070295 DO - 10.3390/w8070295 ID - Mazur2016 ER - TY - JOUR AU - Bouétard, A. AU - Noirot, C. AU - Besnard, A. -. L. AU - Bouchez, O. AU - Choisne, D. AU - Robe, E. AU - Klopp, C. AU - Lagadic, L. AU - Coutellec, M. -. A. PY - 2012 DA - 2012// TI - Pyrosequencing-based transcriptomic resources in the pond snail Lymnaea stagnalis, with a focus on genes involved in molecular response to diquat-induced stress JO - Ecotoxicology VL - 21 UR - https://doi.org/10.1007/s10646-012-0977-1 DO - 10.1007/s10646-012-0977-1 ID - Bouétard2012 ER - TY - JOUR AU - Bouétard, A. AU - Besnard, A. -. L. AU - Vassaux, D. AU - Lagadic, L. AU - Coutellec, M. -. A. PY - 2013 DA - 2013// TI - Impact of the redox-cycling herbicide diquat on transcript expression and antioxidant enzymatic activities of the freshwater snail Lymnaea stagnalis JO - Aquat Toxicol VL - 126 UR - https://doi.org/10.1016/j.aquatox.2012.11.013 DO - 10.1016/j.aquatox.2012.11.013 ID - Bouétard2013 ER - TY - STD TI - Akande IS, Odetola AA. In: El Ridi R, editor. Epidemiological Survey of Human and Veterinary Schistosomiasis. London: InTech; 2013. ID - ref14 ER - TY - JOUR AU - Wang, T. AU - Zhao, M. AU - Liang, D. AU - Bose, U. AU - Kaur, S. AU - McManus, D. P. AU - Cummins, S. F. PY - 2017 DA - 2017// TI - Changes in the neuropeptide content of Biomphalaria ganglia nervous system following Schistosoma infection JO - Parasit Vectors VL - 10 UR - https://doi.org/10.1186/s13071-017-2218-1 DO - 10.1186/s13071-017-2218-1 ID - Wang2017 ER - TY - JOUR AU - Adema, C. M. AU - Hillier, L. W. AU - Jones, C. S. AU - Loker, E. S. AU - Knight, M. AU - Minx, P. AU - Oliveira, G. AU - Raghavan, N. AU - Shedlock, A. AU - Amaral, L. R. PY - 2017 DA - 2017// TI - Whole genome analysis of a schistosomiasis-transmitting freshwater snail JO - Nat Commun VL - 8 UR - https://doi.org/10.1038/ncomms15451 DO - 10.1038/ncomms15451 ID - Adema2017 ER - TY - JOUR AU - Catterall, W. A. AU - Dib-Hajj, S. AU - Meisler, M. H. AU - Pietrobon, D. PY - 2008 DA - 2008// TI - Inherited neuronal ion Channelopathies: new windows on complex neurological diseases JO - J Neurosci VL - 28 UR - https://doi.org/10.1523/JNEUROSCI.3901-08.2008 DO - 10.1523/JNEUROSCI.3901-08.2008 ID - Catterall2008 ER - TY - JOUR AU - Hubner, C. A. AU - Jentsch, T. J. PY - 2002 DA - 2002// TI - Ion channel diseases JO - Hum Mol Genet VL - 11 UR - https://doi.org/10.1093/hmg/11.20.2435 DO - 10.1093/hmg/11.20.2435 ID - Hubner2002 ER - TY - JOUR AU - Rudy, B. PY - 1988 DA - 1988// TI - Diversity and ubiquity of K channels JO - Neuroscience VL - 25 UR - https://doi.org/10.1016/0306-4522(88)90033-4 DO - 10.1016/0306-4522(88)90033-4 ID - Rudy1988 ER - TY - STD TI - Coetzee WA, Amarillo Y, Chiu J, Chow A, Ozaita A, Pountney D, Saganich M, Vega-Saenz de Miera E, Rudy B. Molecular diversity of K+ channels. Ann NY Acad Sci. 1999;868:233–85. ID - ref20 ER - TY - JOUR AU - Maljevic, S. AU - Lerche, H. PY - 2013 DA - 2013// TI - Potassium channels: a review of broadening therapeutic possibilities for neurological diseases JO - J Neurol VL - 260 UR - https://doi.org/10.1007/s00415-012-6727-8 DO - 10.1007/s00415-012-6727-8 ID - Maljevic2013 ER - TY - CHAP AU - Waard, M. AU - Gurnett, C. A. AU - Campbell, K. P. ED - Narahashi, T. PY - 1996 DA - 1996// BT - Structural and functional diversity of voltage-activated calcium channels PB - Plenum Press CY - New York ID - Waard1996 ER - TY - JOUR AU - Goldin, A. L. PY - 1999 DA - 1999// TI - Diversity of mammalian voltage-gated sodium channels JO - Ann N Y Acad Sci VL - 868 UR - https://doi.org/10.1111/j.1749-6632.1999.tb11272.x DO - 10.1111/j.1749-6632.1999.tb11272.x ID - Goldin1999 ER - TY - JOUR AU - Betz, H. PY - 1990 DA - 1990// TI - Ligand-gated ion channels in the brain: the amino acid receptor superfamily JO - Neuron VL - 5 UR - https://doi.org/10.1016/0896-6273(90)90077-S DO - 10.1016/0896-6273(90)90077-S ID - Betz1990 ER - TY - JOUR AU - Traynelis, S. F. AU - Wollmuth, L. P. AU - McBain, C. J. AU - Menniti, F. S. AU - Vance, K. M. AU - Ogden, K. K. AU - Hansen, K. B. AU - Yuan, H. AU - Myers, S. J. AU - Dingledine, R. PY - 2010 DA - 2010// TI - Glutamate receptor ion channels: structure, regulation, and function JO - Pharmacol Rev VL - 62 UR - https://doi.org/10.1124/pr.109.002451 DO - 10.1124/pr.109.002451 ID - Traynelis2010 ER - TY - JOUR AU - Sigel, E. AU - Steinmann, M. E. PY - 2012 DA - 2012// TI - Structure, function, and modulation of GABAA receptors JO - J Biol Chem VL - 287 UR - https://doi.org/10.1074/jbc.R112.386664 DO - 10.1074/jbc.R112.386664 ID - Sigel2012 ER - TY - JOUR AU - Wu, J. AU - Lukas, R. J. PY - 2011 DA - 2011// TI - Naturally-expressed nicotinic acetylcholine receptor subtypes JO - Biochem Pharmacol VL - 82 UR - https://doi.org/10.1016/j.bcp.2011.07.067 DO - 10.1016/j.bcp.2011.07.067 ID - Wu2011 ER - TY - JOUR AU - Barnes, N. M. AU - Sharp, T. PY - 1999 DA - 1999// TI - A review of central 5-HT receptors and their function JO - Neuropharmacology VL - 38 UR - https://doi.org/10.1016/S0028-3908(99)00010-6 DO - 10.1016/S0028-3908(99)00010-6 ID - Barnes1999 ER - TY - STD TI - Burnstock G, Kennedy C. P2X receptors in health and disease. Adv Pharmacol. 2011;61:333–72. ID - ref29 ER - TY - JOUR AU - Baumann, A. AU - Grupe, A. AU - Ackermann, A. AU - Pongs, O. PY - 1988 DA - 1988// TI - Structure of the voltage-dependent potassium channel is highly conserved from Drosophila to vertebrate central nervous systems JO - EMBO J VL - 7 UR - https://doi.org/10.1002/j.1460-2075.1988.tb03092.x DO - 10.1002/j.1460-2075.1988.tb03092.x ID - Baumann1988 ER - TY - JOUR AU - Salkoff, L. AU - Baker, K. AU - Butler, A. AU - Covarrubias, M. AU - Pak, M. D. AU - Wei, A. PY - 1992 DA - 1992// TI - An essential ‘set’ of K+ channels conserved in flies, mice and humans JO - Trends Neurosci VL - 15 UR - https://doi.org/10.1016/0166-2236(92)90165-5 DO - 10.1016/0166-2236(92)90165-5 ID - Salkoff1992 ER - TY - JOUR AU - Fleishman, S. J. AU - Yifrach, O. AU - Ben-Tal, N. PY - 2004 DA - 2004// TI - An evolutionarily conserved network of amino acids mediates gating in voltage-dependent potassium channels JO - J Mol Biol VL - 340 UR - https://doi.org/10.1016/j.jmb.2004.04.064 DO - 10.1016/j.jmb.2004.04.064 ID - Fleishman2004 ER - TY - JOUR AU - Harvey, R. J. AU - Vreugdenhil, E. AU - Barnard, E. A. AU - Darlison, M. G. PY - 1990 DA - 1990// TI - Cloning of genomic and cDNA sequences encoding an invertebrate γ-aminobutyric acid a receptor subunit JO - Biochem Soc Trans VL - 18 UR - https://doi.org/10.1042/bst0180438 DO - 10.1042/bst0180438 ID - Harvey1990 ER - TY - JOUR AU - Hutton, M. L. AU - Harvey, R. J. AU - Barnard, E. A. AU - Darlison, M. G. PY - 1991 DA - 1991// TI - Cloning of a cDNA that encodes an invertebrate glutamate subunit JO - FEBS J VL - 292 ID - Hutton1991 ER - TY - JOUR AU - Stühmer, T. AU - Amar, M. AU - Harvey, R. J. AU - Bermudez, I. AU - Minnen, J. AU - Darlison, M. G. AU - Minnen, J. V. AU - Darlison, M. G. PY - 1996 DA - 1996// TI - Structure and pharmacological properties of a molluscan glutamate-gated cation channel and its likely role in feeding behavior JO - J Neurosci VL - 16 UR - https://doi.org/10.1523/JNEUROSCI.16-09-02869.1996 DO - 10.1523/JNEUROSCI.16-09-02869.1996 ID - Stühmer1996 ER - TY - JOUR AU - Ha, T. J. AU - Kohn, A. B. AU - Bobkova, Y. V. AU - Moroz, L. L. PY - 2006 DA - 2006// TI - Molecular characterization of NMDA-like receptors in Aplysia and Lymnaea: relevance to memory mechanisms JO - Biol Bull VL - 210 UR - https://doi.org/10.2307/4134562 DO - 10.2307/4134562 ID - Ha2006 ER - TY - JOUR AU - Smit, A. B. AU - Syed, N. I. AU - Schaap, D. AU - Minnen, J. AU - Klumperman, J. AU - Kits, K. S. AU - Lodder, H. AU - Schors, R. C. AU - Elk, R. AU - Sorgedrager, B. PY - 2001 DA - 2001// TI - A glia-derived acetylcholine-binding protein that modulates synaptic transmission JO - Nature VL - 411 UR - https://doi.org/10.1038/35077000 DO - 10.1038/35077000 ID - Smit2001 ER - TY - JOUR AU - Spafford, J. D. AU - Chen, L. AU - Feng, Z. P. AU - Smit, A. B. AU - Zamponi, G. W. PY - 2003 DA - 2003// TI - Expression and modulation of an invertebrate presynaptic calcium channel α1 subunit homolog JO - J Biol Chem VL - 278 UR - https://doi.org/10.1074/jbc.M302212200 DO - 10.1074/jbc.M302212200 ID - Spafford2003 ER - TY - JOUR AU - Spafford, J. D. AU - Munno, D. W. AU - Nierop, P. AU - Feng, Z. P. AU - Jarvis, S. E. AU - Gallin, W. J. AU - Smit, A. B. AU - Zamponi, G. W. AU - Syed, N. I. PY - 2003 DA - 2003// TI - Calcium channel structural determinants of synaptic transmission between identified invertebrate neurons JO - J Biol Chem VL - 278 UR - https://doi.org/10.1074/jbc.M211076200 DO - 10.1074/jbc.M211076200 ID - Spafford2003 ER - TY - JOUR AU - Spafford, J. D. AU - Dunn, T. AU - Smit, A. B. AU - Syed, N. I. AU - Zamponi, G. W. PY - 2006 DA - 2006// TI - In vitro characterization of L-type calcium channels and their contribution to firing behavior in invertebrate respiratory neurons JO - J Neurophysiol VL - 95 UR - https://doi.org/10.1152/jn.00658.2005 DO - 10.1152/jn.00658.2005 ID - Spafford2006 ER - TY - JOUR AU - Senatore, A. AU - Spafford, J. D. PY - 2010 DA - 2010// TI - Transient and big are key features of an invertebrate T-type channel (LCav3) from the central nervous system of Lymnaea stagnalis JO - J Biol Chem VL - 285 UR - https://doi.org/10.1074/jbc.M109.090753 DO - 10.1074/jbc.M109.090753 ID - Senatore2010 ER - TY - JOUR AU - Bavan, S. AU - Straub, V. A. AU - Webb, T. E. AU - Ennion, S. J. PY - 2012 DA - 2012// TI - Cloning and Characterization of a P2X Receptor Expressed in the Central Nervous System of Lymnaea stagnalis JO - PLoS One VL - 7 UR - https://doi.org/10.1371/journal.pone.0050487 DO - 10.1371/journal.pone.0050487 ID - Bavan2012 ER - TY - JOUR AU - Adams, D. J. AU - Smith, S. J. AU - Thompson, S. H. PY - 1980 DA - 1980// TI - Ionic currents in Molluscan Soma JO - Annu Rev Neurosci VL - 3 UR - https://doi.org/10.1146/annurev.ne.03.030180.001041 DO - 10.1146/annurev.ne.03.030180.001041 ID - Adams1980 ER - TY - JOUR AU - Moroz, L. L. AU - Edwards, J. R. AU - Puthanveettil, S. V. AU - Kohn, A. B. AU - Ha, T. AU - Heyland, A. AU - Knudsen, B. AU - Sahni, A. AU - Yu, F. AU - Liu, L. PY - 2006 DA - 2006// TI - Neuronal transcriptome of Aplysia: neuronal compartments and circuitry JO - Cell VL - 127 UR - https://doi.org/10.1016/j.cell.2006.09.052 DO - 10.1016/j.cell.2006.09.052 ID - Moroz2006 ER - TY - JOUR AU - Kenny, N. J. AU - Truchado-García, M. AU - Grande, C. PY - 2016 DA - 2016// TI - Deep, multi-stage transcriptome of the schistosomiasis vector Biomphalaria glabrata provides platform for understanding molluscan disease-related pathways JO - BMC Infect Dis VL - 16 UR - https://doi.org/10.1186/s12879-016-1944-x DO - 10.1186/s12879-016-1944-x ID - Kenny2016 ER - TY - JOUR AU - Gauss, R. AU - Seifert, R. AU - Kaupp, U. B. PY - 1998 DA - 1998// TI - Molecular identification of a hyperpolarization-activated channel in sea urchin sperm JO - Nature VL - 395 UR - https://doi.org/10.1038/31248 DO - 10.1038/31248 ID - Gauss1998 ER - TY - JOUR AU - Feske, S. AU - Gwack, Y. AU - Prakriya, M. AU - Srikanth, S. AU - Puppel, S. H. AU - Tanasa, B. AU - Hogan, P. G. AU - Lewis, R. S. AU - Daly, M. AU - Rao, A. PY - 2006 DA - 2006// TI - A mutation in Orai1 causes immune deficiency by abrogating CRAC channel function JO - Nature VL - 441 UR - https://doi.org/10.1038/nature04702 DO - 10.1038/nature04702 ID - Feske2006 ER - TY - JOUR AU - Prakriya, M. AU - Feske, S. AU - Gwack, Y. AU - Srikanth, S. AU - Rao, A. AU - Hogan, P. G. PY - 2006 DA - 2006// TI - Orai1 is an essential pore subunit of the CRAC channel JO - Nature VL - 443 UR - https://doi.org/10.1038/nature05122 DO - 10.1038/nature05122 ID - Prakriya2006 ER - TY - JOUR AU - Feng, Z. P. AU - Zhang, Z. AU - Kesteren, R. E. AU - Straub, V. A. AU - Nierop, P. AU - Jin, K. AU - Nejatbakhsh, N. AU - Goldberg, J. I. AU - Spencer, G. E. AU - Yeoman, M. S. PY - 2009 DA - 2009// TI - Transcriptome analysis of the central nervous system of the mollusc Lymnaea stagnalis JO - BMC Genomics VL - 10 UR - https://doi.org/10.1186/1471-2164-10-451 DO - 10.1186/1471-2164-10-451 ID - Feng2009 ER - TY - JOUR AU - Sadamoto, H. AU - Takahashi, H. AU - Okada, T. AU - Kenmoku, H. AU - Toyota, M. AU - Asakawa, Y. PY - 2012 DA - 2012// TI - de novo sequencing and transcriptome analysis of the central nervous system of mollusc Lymnaea stagnalis by deep RNA sequencing JO - PLoS One VL - 7 UR - https://doi.org/10.1371/journal.pone.0042546 DO - 10.1371/journal.pone.0042546 ID - Sadamoto2012 ER - TY - STD TI - Coutellec MA, et al. Reference genome of the freshwater snail Lymnaea stagnalis, a multidisciplinary invertebrate model: overall rationale of the STAGING project. In: Pearls of wisdom: synergising leadership and expertise in molluscan genomics, a Theo Murphy international scientific meeting by the Royal Society. Newport Pagnell: The Royal Society, Chicheley Hall; 2019 https://royalsociety.org/science-events-and-lectures/2019/09/pearls-of-wisdom/. UR - https://royalsociety.org/science-events-and-lectures/2019/09/pearls-of-wisdom/ ID - ref51 ER - TY - JOUR AU - Clamp, M. AU - Fry, B. AU - Kamal, M. AU - Xie, X. AU - Cuff, J. AU - Lin, M. F. AU - Kellis, M. AU - Lindblad-Toh, K. AU - Lander, E. S. PY - 2007 DA - 2007// TI - Distinguishing protein-coding and noncoding genes in the human genome JO - Proc Natl Acad Sci U S A VL - 104 UR - https://doi.org/10.1073/pnas.0709013104 DO - 10.1073/pnas.0709013104 ID - Clamp2007 ER - TY - STD TI - Marin R, Cortez D, Lamanna F, Pradeepa MM, Leushkin E, Julien P, Liechti A, Halbert J, Brüning T, Mössinger K, et al. Convergent origination of a Drosophila−like dosage compensation mechanism in a reptile lineage. Genome Res. 2017;27(12):1974–87. ID - ref53 ER - TY - JOUR AU - Modzelewska, K. AU - Boer Elena, F. AU - Mosbruger Timothy, L. AU - Picard, D. AU - Anderson, D. AU - Miles Rodney, R. AU - Kroll, M. AU - Oslund, W. AU - Pysher Theodore, J. AU - Schiffman Joshua, D. PY - 2016 DA - 2016// TI - MEK inhibitors reverse growth of Embryonal brain tumors derived from Oligoneural precursor cells JO - Cell Rep VL - 17 UR - https://doi.org/10.1016/j.celrep.2016.09.081 DO - 10.1016/j.celrep.2016.09.081 ID - Modzelewska2016 ER - TY - JOUR AU - Kaletsky, R. AU - Lakhina, V. AU - Arey, R. AU - Williams, A. AU - Landis, J. AU - Ashraf, J. AU - Murphy, C. T. PY - 2016 DA - 2016// TI - The C. elegans adult neuronal IIS/FOXO transcriptome reveals adult phenotype regulators JO - Nature VL - 529 UR - https://doi.org/10.1038/nature16483 DO - 10.1038/nature16483 ID - Kaletsky2016 ER - TY - JOUR AU - Straub, V. AU - Staras, K. AU - Kemenes, G. AU - Benjamin, P. R. PY - 2002 DA - 2002// TI - Endogenous and network properties of Lymnaea feeding central pattern generator interneurons JO - J Neurophysiol VL - 88 UR - https://doi.org/10.1152/jn.2002.88.4.1569 DO - 10.1152/jn.2002.88.4.1569 ID - Straub2002 ER - TY - JOUR AU - Massobrio, P. AU - Tessadori, J. AU - Chiappalone, M. AU - Ghirardi, M. PY - 2015 DA - 2015// TI - In vitro studies of neuronal networks and synaptic plasticity in invertebrates and in mammals using multielectrode arrays JO - Neural Plasticity VL - 2015 UR - https://doi.org/10.1155/2015/196195 DO - 10.1155/2015/196195 ID - Massobrio2015 ER - TY - JOUR AU - Dong, N. AU - Senzel, A. AU - Li, K. AU - Lu, T. Z. AU - Guo, C. H. AU - Aleksic, M. AU - Feng, Z. P. PY - 2018 DA - 2018// TI - MEN1 tumor suppressor gene is required for long-term memory formation in an aversive operant conditioning model of Lymnaea stagnalis JO - Neuroscience VL - 379 UR - https://doi.org/10.1016/j.neuroscience.2018.02.018 DO - 10.1016/j.neuroscience.2018.02.018 ID - Dong2018 ER - TY - JOUR AU - Winlow, W. AU - Syed, N. I. PY - 1992 DA - 1992// TI - The respiratory central pattern generator of Lymnaea JO - Acta Biol Hung VL - 43 ID - Winlow1992 ER - TY - JOUR AU - Silverman-Gavrila, L. B. AU - Lu, T. Z. AU - Prashad, R. C. AU - Nejatbakhsh, N. AU - Charlton, M. P. AU - Feng, Z. P. PY - 2009 DA - 2009// TI - Neural phosphoproteomics of a chronic hypoxia model-Lymnaea stagnalis JO - Neuroscience VL - 161 UR - https://doi.org/10.1016/j.neuroscience.2009.03.043 DO - 10.1016/j.neuroscience.2009.03.043 ID - Silverman-Gavrila2009 ER - TY - JOUR AU - Rosenegger, D. AU - Lukowiak, K. PY - 2010 DA - 2010// TI - The participation of NMDA receptors, PKC, and MAPK in the formation of memory following operant conditioning in Lymnaea JO - Mol Brain VL - 3 UR - https://doi.org/10.1186/1756-6606-3-24 DO - 10.1186/1756-6606-3-24 ID - Rosenegger2010 ER - TY - JOUR AU - Lu, T. Z. AU - Kostelecki, W. AU - Sun, C. L. F. AU - Dong, N. AU - Pérez Velázquez, J. L. AU - Feng, Z. P. PY - 2016 DA - 2016// TI - High sensitivity of spontaneous spike frequency to sodium leak current in a Lymnaea pacemaker neuron JO - Eur J Neurosci VL - 44 UR - https://doi.org/10.1111/ejn.13426 DO - 10.1111/ejn.13426 ID - Lu2016 ER - TY - JOUR AU - Dong, N. AU - Feng, Z. P. PY - 2017 DA - 2017// TI - Inverse relationship between basal pacemaker neuron activity and aversive long-term memory formation in Lymnaea stagnalis JO - Front Cell Neurosci VL - 10 ID - Dong2017 ER - TY - JOUR AU - Adema, C. M. AU - Deutekom-Mulder, E. C. AU - Knaap, W. P. W. AU - Sminia, T. PY - 1994 DA - 1994// TI - Schistosomicidal activities of Lymnaea stagnalis haemocytes: the role of oxygen radicals JO - Parasitology VL - 109 UR - https://doi.org/10.1017/S0031182000080732 DO - 10.1017/S0031182000080732 ID - Adema1994 ER - TY - JOUR AU - Cho, H. AU - Davis, J. AU - Li, X. AU - Smith, K. S. AU - Battle, A. AU - Montgomery, S. B. PY - 2014 DA - 2014// TI - High-resolution Transcriptome analysis with long-read RNA sequencing JO - PLoS One VL - 9 UR - https://doi.org/10.1371/journal.pone.0108095 DO - 10.1371/journal.pone.0108095 ID - Cho2014 ER - TY - JOUR AU - Nakasugi, K. AU - Crowhurst, R. AU - Bally, J. AU - Waterhouse, P. PY - 2014 DA - 2014// TI - Combining Transcriptome assemblies from multiple de novo assemblers in the Allo-Tetraploid plant Nicotiana benthamiana JO - PLoS One VL - 9 UR - https://doi.org/10.1371/journal.pone.0091776 DO - 10.1371/journal.pone.0091776 ID - Nakasugi2014 ER - TY - JOUR AU - Venturini, L. AU - Caim, S. AU - Kaithakottil, G. G. AU - Mapleson, D. L. AU - Swarbreck, D. PY - 2018 DA - 2018// TI - Leveraging multiple transcriptome assembly methods for improved gene structure annotation JO - GigaScience VL - 7 UR - https://doi.org/10.1093/gigascience/giy093 DO - 10.1093/gigascience/giy093 ID - Venturini2018 ER - TY - JOUR AU - Jiménez, C. R. AU - Spijker, S. AU - Schipper, S. AU - Lodder, J. C. AU - Janse, C. K. AU - Geraerts, W. P. M. AU - Minnen, J. AU - Syed, N. I. AU - Burlingame, A. L. AU - Smit, A. B. PY - 2006 DA - 2006// TI - Peptidomics of a single identified neuron reveals diversity of multiple neuropeptides with convergent actions on cellular excitability JO - J Neurosci VL - 26 UR - https://doi.org/10.1523/JNEUROSCI.2566-05.2006 DO - 10.1523/JNEUROSCI.2566-05.2006 ID - Jiménez2006 ER - TY - JOUR AU - Brezden, B. L. AU - Yeoman, M. S. AU - Gardner, D. R. AU - Benjamin, P. R. PY - 1999 DA - 1999// TI - FMRFamide-Activated Ca2+ Channels in Lymnaea Heart Cells Are Modulated by “SEEPLY,” a Neuropeptide Encoded on the Same Gene JO - J Neurophysiol VL - 81 UR - https://doi.org/10.1152/jn.1999.81.4.1818 DO - 10.1152/jn.1999.81.4.1818 ID - Brezden1999 ER - TY - JOUR AU - Zhang, G. AU - Vilim, F. S. AU - Liu, D. -. D. AU - Romanova, E. V. AU - Yu, K. AU - Yuan, W. -. D. AU - Xiao, H. AU - Hummon, A. B. AU - Chen, T. -. T. AU - Alexeeva, V. PY - 2017 DA - 2017// TI - Discovery of leucokinin-like neuropeptides that modulate a specific parameter of feeding motor programs in the molluscan model, Aplysia JO - J Biol Chem VL - 292 UR - https://doi.org/10.1074/jbc.M117.795450 DO - 10.1074/jbc.M117.795450 ID - Zhang2017 ER - TY - JOUR AU - Joris, M. AU - Koene, J. M. PY - 2010 DA - 2010// TI - Neuro-endocrine control of reproduction in hermaphroditic freshwater snails: mechanisms and evolution JO - Front Behav Neurosci VL - 4 ID - Joris2010 ER - TY - JOUR AU - Morishita, F. AU - Furukawa, Y. AU - Matsushima, O. AU - Minakata, H. PY - 2010 DA - 2010// TI - Regulatory actions of neuropeptides and peptide hormones on the reproduction of molluscsThe present review is one of a series of occasional review articles that have been invited by the editors and will feature the broad range of disciplines and expertise represented in our editorial advisory board JO - Can J Zool VL - 88 UR - https://doi.org/10.1139/Z10-041 DO - 10.1139/Z10-041 ID - Morishita2010 ER - TY - JOUR AU - Senatore, A. AU - Edirisinghe, N. AU - Katz, P. S. PY - 2015 DA - 2015// TI - Deep mRNA sequencing of the Tritonia diomedea brain transcriptome provides access to gene homologues for neuronal excitability, synaptic transmission and peptidergic signalling JO - PLoS One VL - 10 UR - https://doi.org/10.1371/journal.pone.0118321 DO - 10.1371/journal.pone.0118321 ID - Senatore2015 ER - TY - JOUR AU - Mansour, T. A. AU - Habib, M. R. AU - Rodríguez, L. C. V. AU - Vázquez, A. H. AU - Alers, J. M. AU - Ghezzi, A. AU - Croll, R. P. AU - Brown, C. T. AU - Miller, M. W. PY - 2017 DA - 2017// TI - Central nervous system transcriptome of Biomphalaria alexandrina, an intermediate host for schistosomiasis JO - BMC Res Notes VL - 10 UR - https://doi.org/10.1186/s13104-017-3018-6 DO - 10.1186/s13104-017-3018-6 ID - Mansour2017 ER - TY - JOUR AU - Lu, T. Z. AU - Feng, Z. -. P. PY - 2011 DA - 2011// TI - A sodium leak current regulates pacemaker activity of adult central pattern generator neurons in Lymnaea Stagnalis JO - PLoS One VL - 6 UR - https://doi.org/10.1371/journal.pone.0018745 DO - 10.1371/journal.pone.0018745 ID - Lu2011 ER - TY - JOUR AU - Dawson, T. F. AU - Boone, A. N. AU - Senatore, A. AU - Piticaru, J. AU - Thiyagalingam, S. AU - Jackson, D. AU - Davison, A. AU - Spafford, J. D. PY - 2014 DA - 2014// TI - Gene splicing of an invertebrate beta subunit (LCavβ) in the N-terminal and HOOK domains and its regulation of LCav1 and LCav2 calcium channels JO - PLoS One VL - 9 UR - https://doi.org/10.1371/journal.pone.0092941 DO - 10.1371/journal.pone.0092941 ID - Dawson2014 ER - TY - JOUR AU - Dong, N. AU - Lee, D. W. K. AU - Sun, H. -. s. AU - Feng, Z. -. P. PY - 2018 DA - 2018// TI - Dopamine-mediated calcium channel regulation in synaptic suppression in L. stagnalis interneurons JO - Channels VL - 12 UR - https://doi.org/10.1080/19336950.2018.1457897 DO - 10.1080/19336950.2018.1457897 ID - Dong2018 ER - TY - JOUR AU - Gleichmann, M. AU - Mattson, M. P. PY - 2011 DA - 2011// TI - Neuronal calcium homeostasis and Dysregulation JO - Antioxid Redox Signal VL - 14 UR - https://doi.org/10.1089/ars.2010.3386 DO - 10.1089/ars.2010.3386 ID - Gleichmann2011 ER - TY - JOUR AU - Lu, B. AU - Su, Y. AU - Das, S. AU - Liu, J. AU - Xia, J. AU - Ren, D. PY - 2007 DA - 2007// TI - The Neuronal Channel NALCN contributes resting sodium permeability and is required for Normal respiratory rhythm JO - Cell VL - 129 UR - https://doi.org/10.1016/j.cell.2007.02.041 DO - 10.1016/j.cell.2007.02.041 ID - Lu2007 ER - TY - JOUR AU - Moose, D. L. AU - Haase, S. J. AU - Aldrich, B. T. AU - Lear, B. C. PY - 2017 DA - 2017// TI - The narrow abdomen Ion Channel complex is highly stable and persists from development into adult stages to promote behavioral rhythmicity JO - Front Cell Neurosci VL - 11 UR - https://doi.org/10.3389/fncel.2017.00159 DO - 10.3389/fncel.2017.00159 ID - Moose2017 ER - TY - JOUR AU - Xie, L. AU - Gao, S. AU - Alcaire Salvador, M. AU - Aoyagi, K. AU - Wang, Y. AU - Griffin Jennifer, K. AU - Stagljar, I. AU - Nagamatsu, S. AU - Zhen, M. PY - 2013 DA - 2013// TI - NLF-1 delivers a sodium Leak Channel to regulate neuronal excitability and modulate rhythmic locomotion JO - Neuron VL - 77 UR - https://doi.org/10.1016/j.neuron.2013.01.018 DO - 10.1016/j.neuron.2013.01.018 ID - Xie2013 ER - TY - JOUR AU - Himmel, N. J. AU - Cox, D. N. PY - 2020 DA - 2020// TI - Transient receptor potential channels: current perspectives on evolution, structure, function and nomenclature JO - Proc R Soc B Biol Sci VL - 287 UR - https://doi.org/10.1098/rspb.2020.1309 DO - 10.1098/rspb.2020.1309 ID - Himmel2020 ER - TY - JOUR AU - Baylis, H. A. AU - Goyal, K. PY - 2007 DA - 2007// TI - TRPM channel function in Caenorhabditis elegans JO - Biochem Soc Trans VL - 35 UR - https://doi.org/10.1042/BST0350129 DO - 10.1042/BST0350129 ID - Baylis2007 ER - TY - JOUR AU - Koike, C. AU - Numata, T. AU - Ueda, H. AU - Mori, Y. AU - Furukawa, T. PY - 2010 DA - 2010// TI - TRPM1: a vertebrate TRP channel responsible for retinal ON bipolar function JO - Cell Calcium VL - 48 UR - https://doi.org/10.1016/j.ceca.2010.08.004 DO - 10.1016/j.ceca.2010.08.004 ID - Koike2010 ER - TY - JOUR AU - Jiao, Y. AU - Cao, Y. AU - Zheng, Z. AU - Liu, M. AU - Guo, X. PY - 2019 DA - 2019// TI - Massive expansion and diversity of nicotinic acetylcholine receptors in lophotrochozoans JO - BMC Genomics VL - 20 UR - https://doi.org/10.1186/s12864-019-6278-9 DO - 10.1186/s12864-019-6278-9 ID - Jiao2019 ER - TY - JOUR AU - Nierop, P. AU - Bertrand, S. AU - Munno, D. W. AU - Gouwenberg, Y. AU - Minnen, J. AU - Spafford, J. D. AU - Syed, N. I. AU - Bertrand, D. AU - Smit, A. B. PY - 2006 DA - 2006// TI - Identification and functional expression of a family of nicotinic acetylcholine receptor subunits in the central nervous system of the mollusc Lymnaea stagnalis JO - J Biol Chem VL - 281 UR - https://doi.org/10.1074/jbc.M508571200 DO - 10.1074/jbc.M508571200 ID - Nierop2006 ER - TY - JOUR AU - Rolls, M. M. AU - Jegla, T. J. PY - 2015 DA - 2015// TI - Neuronal polarity: an evolutionary perspective JO - J Exp Biol VL - 218 UR - https://doi.org/10.1242/jeb.112359 DO - 10.1242/jeb.112359 ID - Rolls2015 ER - TY - JOUR AU - Seebacher, F. PY - 2018 DA - 2018// TI - The evolution of metabolic regulation in animals JO - Comp Biochem Physiol B: Biochem Mol Biol VL - 224 UR - https://doi.org/10.1016/j.cbpb.2017.11.002 DO - 10.1016/j.cbpb.2017.11.002 ID - Seebacher2018 ER - TY - JOUR AU - Fadda, M. AU - Hasakiogullari, I. AU - Temmerman, L. AU - Beets, I. AU - Zels, S. AU - Schoofs, L. PY - 2019 DA - 2019// TI - Regulation of feeding and metabolism by neuropeptide F and short neuropeptide F in invertebrates JO - Front Endocrinol (Lausanne) VL - 10 UR - https://doi.org/10.3389/fendo.2019.00064 DO - 10.3389/fendo.2019.00064 ID - Fadda2019 ER - TY - JOUR AU - Altenhoff, A. M. AU - Studer, R. A. AU - Robinson-Rechavi, M. AU - Dessimoz, C. PY - 2012 DA - 2012// TI - Resolving the Ortholog conjecture: Orthologs tend to be weakly, but significantly, more similar in function than Paralogs JO - PLoS Comput Biol VL - 8 UR - https://doi.org/10.1371/journal.pcbi.1002514 DO - 10.1371/journal.pcbi.1002514 ID - Altenhoff2012 ER - TY - JOUR AU - Chen, X. AU - Zhang, J. PY - 2012 DA - 2012// TI - The Ortholog conjecture is untestable by the current gene ontology but is supported by RNA sequencing data JO - PLoS Comput Biol VL - 8 UR - https://doi.org/10.1371/journal.pcbi.1002784 DO - 10.1371/journal.pcbi.1002784 ID - Chen2012 ER - TY - JOUR AU - Rogozin, I. B. AU - Managadze, D. AU - Shabalina, S. A. AU - Koonin, E. V. PY - 2014 DA - 2014// TI - Gene family level comparative analysis of gene expression in mammals validates the Ortholog conjecture JO - Genome Biol Evol VL - 6 UR - https://doi.org/10.1093/gbe/evu051 DO - 10.1093/gbe/evu051 ID - Rogozin2014 ER - TY - JOUR AU - Kasahara, M. AU - Suzuki, T. AU - Pasquier, L. D. PY - 2004 DA - 2004// TI - On the origins of the adaptive immune system: novel insights from invertebrates and cold-blooded vertebrates JO - Trends Immunol VL - 25 UR - https://doi.org/10.1016/j.it.2003.11.005 DO - 10.1016/j.it.2003.11.005 ID - Kasahara2004 ER - TY - JOUR AU - Hughes, A. L. PY - 1998 DA - 1998// TI - Protein phylogenies provide evidence of a radical discontinuity between arthropod and vertebrate immune systems JO - Immunogenetics VL - 47 UR - https://doi.org/10.1007/s002510050360 DO - 10.1007/s002510050360 ID - Hughes1998 ER - TY - JOUR AU - Bosch, M. AU - Hayashi, Y. PY - 2012 DA - 2012// TI - Structural plasticity of dendritic spines JO - Curr Opin Neurobiol VL - 22 UR - https://doi.org/10.1016/j.conb.2011.09.002 DO - 10.1016/j.conb.2011.09.002 ID - Bosch2012 ER - TY - JOUR AU - Fredriksson, R. AU - Schiöth, H. B. PY - 2005 DA - 2005// TI - The repertoire of G-protein–coupled receptors in fully sequenced genomes JO - Mol Pharmacol VL - 67 UR - https://doi.org/10.1124/mol.104.009001 DO - 10.1124/mol.104.009001 ID - Fredriksson2005 ER - TY - JOUR AU - Krishnan, A. AU - Mustafa, A. AU - Almén, M. S. AU - Fredriksson, R. AU - Williams, M. J. AU - Schiöth, H. B. PY - 2015 DA - 2015// TI - Evolutionary hierarchy of vertebrate-like heterotrimeric G protein families JO - Mol Phylogenet Evol VL - 91 UR - https://doi.org/10.1016/j.ympev.2015.05.009 DO - 10.1016/j.ympev.2015.05.009 ID - Krishnan2015 ER - TY - CHAP AU - Winlow, W. AU - Benjamin, P. R. ED - Salanki, J. PY - 1976 DA - 1976// TI - Neuronal mapping of the brain of the pond snail, Lymnaea stagnalis (L.) BT - Neurobiology of Invertebrates, Gastropoda Brain PB - Akademiai Kiado CY - Budapest ID - Winlow1976 ER - TY - JOUR AU - Hui, K. AU - Fei, G. H. AU - Saab, B. J. AU - Su, J. AU - Roder, J. C. AU - Feng, Z. P. PY - 2007 DA - 2007// TI - Neuronal calcium sensor-1 modulation of optimal calcium level for neurite outgrowth JO - Development VL - 134 UR - https://doi.org/10.1242/dev.008979 DO - 10.1242/dev.008979 ID - Hui2007 ER - TY - JOUR AU - Natsidis, P. AU - Schiffer, P. H. AU - Salvador-Martínez, I. AU - Telford, M. J. PY - 2019 DA - 2019// TI - Computational discovery of hidden breaks in 28S ribosomal RNAs across eukaryotes and consequences for RNA Integrity Numbers JO - Sci Rep VL - 9 UR - https://doi.org/10.1038/s41598-019-55573-1 DO - 10.1038/s41598-019-55573-1 ID - Natsidis2019 ER - TY - JOUR AU - Alberti, A. AU - Poulain, J. AU - Engelen, S. AU - Labadie, K. AU - Romac, S. AU - Ferrera, I. AU - Albini, G. AU - Aury, J. -. M. AU - Belser, C. AU - Bertrand, A. PY - 2017 DA - 2017// TI - Viral to metazoan marine plankton nucleotide sequences from the Tara oceans expedition JO - Scientific Data VL - 4 UR - https://doi.org/10.1038/sdata.2017.93 DO - 10.1038/sdata.2017.93 ID - Alberti2017 ER - TY - JOUR AU - Kopylova, E. AU - Noé, L. AU - Touzet, H. PY - 2012 DA - 2012// TI - SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data JO - Bioinformatics VL - 28 UR - https://doi.org/10.1093/bioinformatics/bts611 DO - 10.1093/bioinformatics/bts611 ID - Kopylova2012 ER - TY - BOOK AU - Andrews, S. PY - 2010 DA - 2010// TI - FastQC: a quality control tool for high throughput sequence data ID - Andrews2010 ER - TY - JOUR AU - Song, L. AU - Florea, L. PY - 2015 DA - 2015// TI - Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads JO - GigaScience VL - 4 UR - https://doi.org/10.1186/s13742-015-0089-y DO - 10.1186/s13742-015-0089-y ID - Song2015 ER - TY - JOUR AU - Dobin, A. AU - Davis, C. A. AU - Schlesinger, F. AU - Drenkow, J. AU - Zaleski, C. AU - Jha, S. AU - Batut, P. AU - Chaisson, M. AU - Gingeras, T. R. PY - 2013 DA - 2013// TI - STAR: ultrafast universal RNA-seq aligner JO - Bioinformatics VL - 29 UR - https://doi.org/10.1093/bioinformatics/bts635 DO - 10.1093/bioinformatics/bts635 ID - Dobin2013 ER - TY - JOUR AU - Pertea, M. AU - Pertea, G. M. AU - Antonescu, C. M. AU - Chang, T. -. C. AU - Mendell, J. T. AU - Salzberg, S. L. PY - 2015 DA - 2015// TI - StringTie enables improved reconstruction of a transcriptome from RNA-seq reads JO - Nat Biotechnol VL - 33 UR - https://doi.org/10.1038/nbt.3122 DO - 10.1038/nbt.3122 ID - Pertea2015 ER - TY - JOUR AU - Shao, M. AU - Kingsford, C. PY - 2017 DA - 2017// TI - Accurate assembly of transcripts through phase-preserving graph decomposition JO - Nat Biotechnol VL - 35 UR - https://doi.org/10.1038/nbt.4020 DO - 10.1038/nbt.4020 ID - Shao2017 ER - TY - JOUR AU - Liu, R. AU - Dickerson, J. PY - 2017 DA - 2017// TI - Strawberry: fast and accurate genome-guided transcript reconstruction and quantification from RNA-Seq JO - PLoS Comput Biol VL - 13 UR - https://doi.org/10.1371/journal.pcbi.1005851 DO - 10.1371/journal.pcbi.1005851 ID - Liu2017 ER - TY - JOUR AU - Grabherr, M. G. AU - Haas, B. J. AU - Yassour, M. AU - Levin, J. Z. AU - Thompson, D. A. AU - Amit, I. AU - Adiconis, X. AU - Fan, L. AU - Raychowdhury, R. AU - Zeng, Q. PY - 2011 DA - 2011// TI - Full-length transcriptome assembly from RNA-Seq data without a reference genome JO - Nat Biotechnol VL - 29 UR - https://doi.org/10.1038/nbt.1883 DO - 10.1038/nbt.1883 ID - Grabherr2011 ER - TY - BOOK AU - Gilbert, D. PY - 2013 DA - 2013// TI - EvidentialGene: mRNA Transcript Assembly Software ID - Gilbert2013 ER - TY - JOUR AU - Visser, E. A. AU - Wegrzyn, J. L. AU - Steenkmap, E. T. AU - Myburg, A. A. AU - Naidoo, S. PY - 2015 DA - 2015// TI - Combined de novo and genome guided assembly and annotation of the Pinus patula juvenile shoot transcriptome JO - BMC Genomics VL - 16 UR - https://doi.org/10.1186/s12864-015-2277-7 DO - 10.1186/s12864-015-2277-7 ID - Visser2015 ER - TY - STD TI - Mamrot J, Legaie R, Ellery SJ, Wilson T, Seemann T, Powell DR, Gardner DK, Walker DW, Temple-Smith P, Papenfuss AT, et al. De novo transcriptome assembly for the spiny mouse (Acomys cahirinus). Sci Rep. 2017;7(1):8996. ID - ref112 ER - TY - JOUR AU - Patro, R. AU - Duggal, G. AU - Love, M. I. AU - Irizarry, R. A. AU - Kingsford, C. PY - 2017 DA - 2017// TI - Salmon provides fast and bias-aware quantification of transcript expression JO - Nat Methods VL - 14 UR - https://doi.org/10.1038/nmeth.4197 DO - 10.1038/nmeth.4197 ID - Patro2017 ER - TY - JOUR AU - Simão, F. A. AU - Waterhouse, R. M. AU - Ioannidis, P. AU - Kriventseva, E. V. AU - Zdobnov, E. M. PY - 2015 DA - 2015// TI - BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs JO - Bioinformatics VL - 31 UR - https://doi.org/10.1093/bioinformatics/btv351 DO - 10.1093/bioinformatics/btv351 ID - Simão2015 ER - TY - JOUR AU - Fu, L. AU - Niu, B. AU - Zhu, Z. AU - Wu, S. AU - Li, W. PY - 2012 DA - 2012// TI - CD-HIT: accelerated for clustering the next-generation sequencing data JO - Bioinformatics VL - 28 UR - https://doi.org/10.1093/bioinformatics/bts565 DO - 10.1093/bioinformatics/bts565 ID - Fu2012 ER - TY - JOUR AU - Chen, S. AU - Zhou, Y. AU - Chen, Y. AU - Gu, J. PY - 2018 DA - 2018// TI - fastp: an ultra-fast all-in-one FASTQ preprocessor JO - Bioinformatics VL - 34 UR - https://doi.org/10.1093/bioinformatics/bty560 DO - 10.1093/bioinformatics/bty560 ID - Chen2018 ER - TY - JOUR AU - MacManes, M. D. AU - Eisen, M. B. PY - 2014 DA - 2014// TI - Characterization of the transcriptome, nucleotide sequence polymorphism, and natural selection in the desert adapted mouse Peromyscus eremicus JO - PeerJ VL - 2 UR - https://doi.org/10.7717/peerj.642 DO - 10.7717/peerj.642 ID - MacManes2014 ER - TY - JOUR AU - Emms, D. M. AU - Kelly, S. PY - 2015 DA - 2015// TI - OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy JO - Genome Biol VL - 16 UR - https://doi.org/10.1186/s13059-015-0721-2 DO - 10.1186/s13059-015-0721-2 ID - Emms2015 ER - TY - JOUR AU - Conway, J. R. AU - Lex, A. AU - Gehlenborg, N. PY - 2017 DA - 2017// TI - UpSetR: an R package for the visualization of intersecting sets and their properties JO - Bioinformatics VL - 33 UR - https://doi.org/10.1093/bioinformatics/btx364 DO - 10.1093/bioinformatics/btx364 ID - Conway2017 ER - TY - JOUR AU - Durinck, S. AU - Spellman, P. T. AU - Birney, E. AU - Huber, W. PY - 2009 DA - 2009// TI - Mapping identifiers for the integration of genomic datasets with the R/bioconductor package biomaRt JO - Nat Protoc VL - 4 UR - https://doi.org/10.1038/nprot.2009.97 DO - 10.1038/nprot.2009.97 ID - Durinck2009 ER - TY - JOUR AU - Reimand, J. AU - Arak, T. AU - Adler, P. AU - Kolberg, L. AU - Reisberg, S. AU - Peterson, H. AU - Vilo, J. PY - 2016 DA - 2016// TI - g:Profiler—a web server for functional interpretation of gene lists (2016 update) JO - Nucleic Acids Res VL - 44 UR - https://doi.org/10.1093/nar/gkw199 DO - 10.1093/nar/gkw199 ID - Reimand2016 ER - TY - JOUR AU - Supek, F. AU - Bošnjak, M. AU - Škunca, N. AU - Šmuc, T. PY - 2011 DA - 2011// TI - REVIGO summarizes and visualizes long lists of gene ontology terms JO - PLoS One VL - 6 UR - https://doi.org/10.1371/journal.pone.0021800 DO - 10.1371/journal.pone.0021800 ID - Supek2011 ER - TY - JOUR AU - Notredame, C. AU - Higgins, D. G. AU - Heringa, J. PY - 2000 DA - 2000// TI - T-coffee: a novel method for fast and accurate multiple sequence alignment JO - J Mol Biol VL - 302 UR - https://doi.org/10.1006/jmbi.2000.4042 DO - 10.1006/jmbi.2000.4042 ID - Notredame2000 ER - TY - JOUR AU - Capella-Gutierrez, S. AU - Silla-Martinez, J. M. AU - Gabaldon, T. PY - 2009 DA - 2009// TI - trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses JO - Bioinformatics VL - 25 UR - https://doi.org/10.1093/bioinformatics/btp348 DO - 10.1093/bioinformatics/btp348 ID - Capella-Gutierrez2009 ER - TY - JOUR AU - Jones, D. T. AU - Taylor, W. R. AU - Thornton, J. M. PY - 1992 DA - 1992// TI - The rapid generation of mutation data matrices from protein sequences JO - Bioinformatics VL - 8 UR - https://doi.org/10.1093/bioinformatics/8.3.275 DO - 10.1093/bioinformatics/8.3.275 ID - Jones1992 ER - TY - JOUR AU - Kumar, S. AU - Stecher, G. AU - Li, M. AU - Knyaz, C. AU - Tamura, K. PY - 2018 DA - 2018// TI - MEGA X: molecular evolutionary genetics analysis across computing platforms JO - Mol Biol Evol VL - 35 UR - https://doi.org/10.1093/molbev/msy096 DO - 10.1093/molbev/msy096 ID - Kumar2018 ER - TY - JOUR AU - Yu, G. AU - Smith, D. K. AU - Zhu, H. AU - Guan, Y. AU - Lam, T. T. Y. PY - 2016 DA - 2016// TI - ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data JO - Methods Ecol Evol VL - 8 UR - https://doi.org/10.1111/2041-210X.12628 DO - 10.1111/2041-210X.12628 ID - Yu2016 ER - TY - JOUR AU - Fernandez, N. F. AU - Gundersen, G. W. AU - Rahman, A. AU - Grimes, M. L. AU - Rikova, K. AU - Hornbeck, P. AU - Ma’ayan, A. PY - 2017 DA - 2017// TI - Clustergrammer, a web-based heatmap visualization and analysis tool for high-dimensional biological data JO - Scientific Data VL - 4 UR - https://doi.org/10.1038/sdata.2017.151 DO - 10.1038/sdata.2017.151 ID - Fernandez2017 ER -