From: Rapid single cell evaluation of human disease and disorder targets using REVEAL: SingleCell™
Array | Dimensions | Attribute data types | Attributes |
---|---|---|---|
RNAQUANTIFICATION | sample_id1 measurementset_id1 cell_id1 feature_id1 | value: float | Raw count, normalized count |
SAMPLE | sample_id2 | name: string description: string project_id: int641 public: bool | Project ID, Sample ID, Subject ID, DOID, UBERONID, Enrichment, Library type, Organism NCBI Taxonomy ID Assay type |
MEASUREMENTSET describes how the data was collected and processed. | measurementset_id2 sample_id1 | experimentset_id: int641 entity: string name: string description: string featureset_id: int641 | |
CELL | cell_id2 sample_id1 | name: string description: string individual_id: int641 | CL ID, Cl ontology |
FEATURE (Genes) Features can also be proteins, other biomolecules, and or hierarchical names. | featureset_id1 gene_symbol_id1 feature_id2 | name: string gene_symbol: string chromosome: string start: string end: string feature_type: string source: string | Feature ID, Featureset ID, ENSG ID, Hugo gene symbol |
FEATURE SET | featureset_id2 | GRCh version, Reference model, Feature-set ID | |
PROJECT FEATURE describes the project, or datasource like HCA | project_id2 | name: string description: string project_id: int641 | Project name, Project ID |