From: Rapid single cell evaluation of human disease and disorder targets using REVEAL: SingleCell™
Capabilities | Search criteria | Query # | Search result # of cells returned (# of projects with data) | Total time (sec) |
---|---|---|---|---|
Selecting a subset of cells (searching across 2.2 M cells and 32 projects) | ||||
By tags | 1 tagCellType.select is any of: [‘Enterocyte’, ‘Enterocytes’, ‘Best4+ Enterocytes’, ‘Enterocyte Progenitors’, ‘Immature Enterocytes 1’, ‘Immature Enterocytes 2’] | 1 | 19 K cells (5 projects) | 14 |
2 tags Above criteria on CellType.select & Location is any of: [‘Rectum’, ‘Decidua’, ‘Ileum’] | 2 | 4827 cells (2 projects) | 9 | |
Selecting cells across projects | ||||
Checking for co expression in more than 1 gene, when expression value lies in a range • Threshold: value > = 1 • Restricting search to normalized data | ‘ACE2’, ‘TMPRSS2’ | 3 | 2282 cells (21 projects) | 26 |
‘ACE2’, ‘TMPRSS2’, ‘DPP4’ | 4 | 561 cells (11 projects) | 32 | |
Search expression | ||||
By gene list across all projects | ‘ACE2’, ‘TMPRSS2’, ‘DPP4’ | 5 | 225 K rows (32 projects; download size: 8 MB) | 15 |
By cells across multiple projects | Using the result of Query 1 to search expression on those cells i.e. searching by ~ 19,000 cells (in the projects with data) | 6 | 26.7 M rows (5 projects; download size: 1019 MB) | 27 |
By selected project | Project: ‘wang20_rectum’; matrix_count: ‘normalized’ | 7 | 11.6 M rows (1 project; download size: 621 MB) | 17 |