Table 1 Descriptive summary of data generated by RNA-Seq
From: Transcriptome analysis reveals modulation of the STAT family in PEDV-infected IPEC-J2 cells
Sample ID | Raw reads | Clean reads | Clean ratio | Total reads for alignment (QC-passed reads + QC-failed reads) | Mapped reads (total) | Mapped ratio (total) | Mapped reads (paired) | Mapping ratio (paired) |
|---|---|---|---|---|---|---|---|---|
Infect 1 | 46,065,300 | 45,922,764 | 0.996905784 | 49,636,717 | 45,797,615 | 92.27% | 38,974,528 | 84.87% |
Infect 2 | 55,562,182 | 55,406,236 | 0.997193307 | 59,954,026 | 55,360,811 | 92.34% | 47,118,286 | 85.04% |
Infect 3 | 50,507,214 | 50,357,430 | 0.997034404 | 54,364,730 | 50,035,130 | 92.04% | 42,426,394 | 84.25% |
Infect 4 | 52,906,558 | 52,752,936 | 0.997096352 | 57,115,291 | 52,716,642 | 92.30% | 45,013,566 | 85.33% |
Infect 5 | 59,979,834 | 59,803,794 | 0.997065014 | 64,780,302 | 59,797,269 | 92.31% | 51,204,340 | 85.62% |
Infect 6 | 52,050,326 | 51,879,500 | 0.996718061 | 55,819,070 | 51,276,842 | 91.86% | 43,823,066 | 84.47% |
Mock 1 | 49,060,712 | 48,908,052 | 0.996888345 | 53,021,565 | 49,094,574 | 92.59% | 41,888,032 | 85.65% |
Mock 2 | 50,977,484 | 50,835,088 | 0.997206688 | 55,172,358 | 51,304,563 | 92.99% | 43,812,718 | 86.19% |
Mock 3 | 46,718,068 | 46,578,322 | 0.997008738 | 50,307,889 | 46,715,213 | 92.86% | 40,165,022 | 86.23% |
Mock 4 | 52,353,214 | 52,206,814 | 0.99720361 | 56,319,798 | 52,293,923 | 92.85% | 44,864,730 | 85.94% |
Mock 5 | 47,101,820 | 46,967,422 | 0.99714665 | 50,670,957 | 47,005,003 | 92.77% | 40,382,898 | 85.98% |
Mock 6 | 48,607,592 | 48,462,936 | 0.997024004 | 52,119,972 | 48,147,901 | 92.38% | 41,313,114 | 85.25% |