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Table 1 The WGS and amplicon datasets used in this study

From: Meta-Apo improves accuracy of 16S-amplicon-based prediction of microbiome function

Dataset

# of WGS samples

# of amplicon samples

Amplicon type

Paired

Source study

Body site

Dataset 1

622

622

V3-V5 16S rRNA

Yes

HMP [2]

Gut, Oral, Skin and Vaginal

Dataset 2

295

295

V1-V3 16S rRNA

Yes

HMP [2]

Gut, Oral and Vaginal

Dataset 3

2354

5350

V3-V5 16S rRNA

No

HMP [2]

Gut, Oral, Skin and Vaginal

Dataset 4

2045

2186

V1-V3 16S rRNA

No

HMP [2]

Gut, Oral and Vaginal

Dataset 5

18

150

V1-V3 16S rRNA

Partiallya

ISME J. 2014 [16]

Oral

  1. aOnly 18 WGS:16S-amplicon sample pairs