From: Meta-Apo improves accuracy of 16S-amplicon-based prediction of microbiome function
Dataset | # of WGS samples | # of amplicon samples | Amplicon type | Paired | Source study | Body site |
---|---|---|---|---|---|---|
Dataset 1 | 622 | 622 | V3-V5 16S rRNA | Yes | HMP [2] | Gut, Oral, Skin and Vaginal |
Dataset 2 | 295 | 295 | V1-V3 16S rRNA | Yes | HMP [2] | Gut, Oral and Vaginal |
Dataset 3 | 2354 | 5350 | V3-V5 16S rRNA | No | HMP [2] | Gut, Oral, Skin and Vaginal |
Dataset 4 | 2045 | 2186 | V1-V3 16S rRNA | No | HMP [2] | Gut, Oral and Vaginal |
Dataset 5 | 18 | 150 | V1-V3 16S rRNA | Partiallya | ISME J. 2014 [16] | Oral |