Table 4 Summary of GWAS analysis for grain yield including number of SNPs, range of P value, range of R2, and range of allele effects in the nine environments
From: GWAS revealed effect of genotype × environment interactions for grain yield of Nebraska winter wheat
Environments | Number of SNPs | Log 10 P- Value | Range of R2 | Range of Allele effect | |||
|---|---|---|---|---|---|---|---|
Min | Max | Min R2 | Max R2 | Min allele effect | Max allele effect | ||
Alliance | 5 | 9.43E-08 | 5.44E-06 | 11.50 | 12.74 | 1.65 (A and C) | 4.29 (T) |
Clay Center | 5 | 9.93E-07 | 1.43E-06 | 10.6 | 11.68 | 2.60 (G and T) | 4.48 (G) |
Grant | 3 | 1.31E-06 | 6.19E-06 | 8.66 | 9.93 | 1.87 (C) | 2.26 (C) |
Kansas | 7 | 1.11E-07 | 3.07E-06 | 10.55 | 12.91 | 1.65 (A) | 2.53(G) |
Lincoln | 11 | 1.03E-09 | 7.38E-06 | 7.36 | 10.44 | 3.04 (A) | 10.58 (A) |
McCook | 11 | 1.03E-08 | 7.39E-06 | 8.72 | 11.58 | 2.36 (C) | 5.19(A and C) |
Mead | 8 | 3.23E-07 | 8.60E-06 | 9.53 | 12.28 | 3.24 (T) | 4,25(A and C) |
North Platte | 9 | 1.32E-07 | 6.05E-06 | 9.06 | 11.83 | 2.06 (A) | 3.59 (A) |
Sidney | 11 | 1.69E-07 | 5.60E-06 | 8.89 | 12.73 | 0.35 (T) | 1.00 (T) |