Chromatin loop anchors contain core structural components of the gene expression machinery in maize

BMC Genomics

Table 2 Hierarchical TAD-like domain counts for replicates 1 and 2

TAD level	Replicate 1 100% read count	Replicate 1 50% read count	Replicate 2 100% read count	Replicate 2 50% read count
0	7131	7989	7257	8028
1	6621	4982	6997	6231
2	3206	2084	3384	2717
3	835	428	911	603
4	157	57	165	83
5	24	10	25	10
6	4	0	0	0

Hierarchical domains (level 0 to 6) were detected in replicates 1 and 2 from Hi-C contact maps generated using 100 and 50% total sequencing read counts. Domains (level 0) were further divided into nested “sub-domains” (levels 1 to 6).

ISSN: 1471-2164