Skip to main content

Table 3 Chromatin loop counts at various resolutions and read counts

From: Chromatin loop anchors contain core structural components of the gene expression machinery in maize

Loop detection resolution

Replicate 2

100% read count

Replicate 2

50% read count

5Kbps

16,568

9118

10Kbps

25,917

16,950

25Kbps

18,397

13,697

50Kbps

35,832

24,358

  1. Chromatin loops were detected with the HICCUPS software tool, from Hi-C interaction matrices generated using 100 and 50% total sequencing read counts.
Back to article page