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Table 4 Co-location of loop anchors with high-resolution conformation capture datasets

From: Chromatin loop anchors contain core structural components of the gene expression machinery in maize

 

2 co-located anchors

1 co-located anchor

0 co-located anchor

Total loop counts

ChIA-PET

(chromatin interactions)

4511

15,890

3817

24,218

HiChIP

(H3K27me3)

3612

24,909

11,297

39,818

HiChIP

(H3K4me3)

10,021

45,011

11,980

67,012

  1. High-resolution ChIA-PET and HiChiP interaction coordinates were compared to replicate 2 Hi-C loop anchor coordinates. Co-location was determined with anchors exhibiting at least 50% overlap between the two data types. Antibodies targeting histone modifications in HiChIP are shown. High-resolution loops were counted once only, after prioritization, in the following order, for exhibiting 2, 1 or 0 co-located anchors.