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Table 5 Replicate 1 loop overlap with hierarchical TAD-like domains

From: Chromatin loop anchors contain core structural components of the gene expression machinery in maize

 

Embedded loops

1 co-located anchor

2 co-located anchors

Level 0

4272

1214

85

Level 1

2484

1024

103

Level 2

852

366

67

Level 3

185

76

7

Level 4

18

13

0

Level 5

2

3

0

Level 6

2

1

0

  1. Out of a total of 16,863 loops (excluding Chr0 loops), 10,774 overlap with replicate 1 domains, including 7815 fully embedded within domains (“Embedded loops”). Hierarchical TAD-like domains (levels 0 to 6) are shown on the left column. “Embedded loops”: Hi-C loops are fully included within a domain; “1 co-located anchor”: one Hi-C loop anchor overlaps with one of the two domain boundaries only, while the other anchor is located inside the domain; “2 co-located anchors”: both Hi-C loop anchors overlap with boundaries from the same domain. Loops overlapping with multiple Level 0 domains or not overlapping with any domains are not shown.