Genome-wide association mapping reveals potential novel loci controlling stripe rust resistance in a Chinese wheat landrace diversity panel from the southern autumn-sown spring wheat zone

Wang, Yuqi; Yu, Can; Cheng, Yukun; Yao, Fangjie; Long, Li; Wu, Yu; Li, Jing; Li, Hao; Wang, Jirui; Jiang, Qiantao; Li, Wei; Pu, Zhien; Qi, Pengfei; Ma, Jian; Deng, Mei; Wei, Yuming; Chen, Xianming; Chen, Guoyue; Kang, Houyang; Jiang, Yunfeng; Zheng, Youliang

doi:10.1186/s12864-020-07331-1

Table 4 The summary of QTL for stripe rust resistance identified at the adult plant stage across five experiments in the panel

From: Genome-wide association mapping reveals potential novel loci controlling stripe rust resistance in a Chinese wheat landrace diversity panel from the southern autumn-sown spring wheat zone

QTL Name	Marker	Chromosome	Position (cM)	Position (Mb)	Trait	Environment	−log 10 (P)	Marker R² (%)	References
QYrsicau-1B.1	1,255,154	1B	32.28	13.09	AUDPC	CZ16, MY16, MY17	3.11–3.92	10.31–13.21	[20, 30, 49, 52]
QYrsicau-1B.2	4,537,457	1B	51.29	3.16	FDS	CZ17	4.44	15.04	[20, 31, 39, 53]
QYrsicau-1B.2					AUDPC	CZ16, MY16, CZ17, BLUP	3.36–3.62	11.09–12.27
QYrsicau-1B.3	Xgwm268	1B		637.37	AUDPC	CZ16, MY16	3.55–4.48	9.4–12.58	[54, 55]
QYrsicau-1B.4	1,161,065	1B	286.65	681.08	FDS	CZ17, MY17	3.53–4.91	9.39–14.14	[56]
QYrsicau-1B.4					AUDPC	CZ17, MY17, BLUP	3.12–5.01	8.23–14.45
QYrsicau-2A	4,004,515	2A	60.91	72.69	FDS	MY16, MY17	3.41–5.65	11.33–19.68	[30, 39, 57,58,59]
QYrsicau-2A					AUDPC	MY16, MY17, BLUP	3.69–5.05	11.91–17.35
QYrsicau-2B.1	1,263,973	2B	71.82	184.66	FDS	CZ16, CZ18	3.11–3.38	10.62–11.26	[41, 60,61,62]
	1,138,058	2B	73.02	235.16	FDS	MY17	3.22	10.77
					AUDPC	CZ16, BLUP	3.02–3.32	9.99–10.64
	4,663,985	2B	74.08	383.85	FDS	CZ17, MY17	3.27–3.29	10.92–10.93
					AUDPC	MY16, CZ17, BLUP	3.2–3.96	10.76–12.85
QYrsicau-2B.2	1,254,647	2B	107.03	798.29	AUDPC	CZ16, CZ17, MY16, BLUP	3.05–3.98	9.99–13.39	[20, 47, 63]
QYrsicau-3B.1	3,943,894	3B	20.8	25.29	FDS	MY16	3.21	8.34	[62, 64, 65]
QYrsicau-3B.1					AUDPC	CZ17, MY16, MY17	3.16–4.08	8.25–11.14
QYrsicau-3B.2	1,133,063	3B	68.59	612.30	FDS	CZ17, MY17	3.11–3.33	10.28–11.15	[41, 50]
QYrsicau-3B.2					AUDPC	CZ16, CZ17, BLUP	3.18–4.61	10.57–15.88
QYrsicau-3B.3	1,086,466	3B	90.44	739.04	FDS	MY17, BLUP	3.66–5.65	11.94–19.67	[66, 67]
					AUDPC	MY17, BLUP	4.39–5.57	14.34–19.31
	1,244,635	3B	90.68	742.26	FDS	MY17, BLUP	4.01–5.66	13.16–19.72
					AUDPC	CZ17, MY17, BLUP	3.11–5.6	10.46–19.41
	1,129,542	3B	90.68	740.11	FDS	CZ17, MY17, BLUP	3.12–6.45	8.09–19.66
					AUDPC	CZ16, CZ17, MY16, MY17, BLUP	3.16–6.37	8.16–19.29
	2,275,715	3B	90.68	742.17	FDS	CZ17, MY17, BLUP	3.43–5.66	11.42–19.71
					AUDPC	CZ17, MY16, MY17, BLUP	3.065.9	10.04–20.58
	1,102,869	3B	91.03	741.30	FDS	MY17, BLUP	3.81–5.65	12.44–19.68
					AUDPC	MY16, MY17, BLUP	3.56–5.61	11.77–19.47
	2,279,272	3B	91.04	739.04	FDS	MY17, BLUP	4.32–5.9	14.23–20.65
					AUDPC	CZ17, MY16, MY17, BLUP	3.13–5.82	10.54–20.26
	1,138,233	3B	92.78	744.32	FDS	MY17, BLUP	3.09–4.73	9.97–16.2
					AUDPC	MY17, BLUP	3.56–4.94	11.47–16.93
	1,107,260	3B	93.62	740.11	FDS	MY17, BLUP	3.08–3.65	9.95–12.28
					AUDPC	CZ16, MY17, BLUP	3.04–4.1	10.07–13.87
	3,940,970	3B	92.68	741.50	FDS	MY17, BLUP	3.63–5.97	11.83–20.92
					AUDPC	CZ17, MY17, BLUP	3.09–5.66	10.39–19.64
	4,439,724	3B	92.68	743.51	FDS	MY17, BLUP	4.16–5.19	13.69–17.91
					AUDPC	MY17, BLUP	4.34–5.43	14.17–18.8
QYrsicau-4A	1,231,042	4A	83.92		IT	CZ16, CZ17, BLUP	3.13–3.36	10.41–11.31	[59]
QYrsicau-5B.1	3,944,166	5B	50.14	511.71	FDS	CZ17, MY17, BLUP	3.99–5.47	13.08–18.86	[30, 68]
QYrsicau-5B.1					AUDPC	CZ17, MY16, MY17, BLUP	3.99–6.07	13.28–21.23
QYrsicau-5B.2	3,022,447	5B	55.6	503.08	FDS	CZ17, MY16, MY17, BLUP	3.1–4.82	10.25–16.53	[66, 69]
					AUDPC	MY16, MY17, BLUP	4.87–6.63	16.03–23.41
	1,103,656	5B	55.6	506.96	FDS	CZ17, MY16, MY17, BLUP	3.4–5.75	11.27–19.88
					AUDPC	CZ17, MY16, MY17, BLUP	4.27–5.99	14.31–20.92
	3,936,865	5B	55.6	527.15	FDS	CZ17	4.05	13.61
					AUDPC	CZ17, MY17, BLUP	3.11–5.32	9.94–18.57
	3,024,339	5B	55.71	527.03	FDS	MY16, MY17, BLUP	3.47–4.97	11.53–17.12
					AUDPC	MY16, MY17, BLUP	5.13–6.72	16.95–23.77
	2,276,711	5B	57.24	522.95	FDS	CZ17, MY17, BLUP	3.98–5.47	13.06–18.85
					AUDPC	CZ17, MY16, MY17, BLUP	4.01–5.99	13.36–20.91
	3,956,366	5B	59.68	511.61	FDS	CZ17, MY17	3.07–4.17	10.23–14.06
					AUDPC	CZ17, MY17	3.92–4.25	13.35–14.42
QYrsicau-5B.3	1,108,002	5B	64.83	510.88	FDS	CZ17, MY17, BLUP	4.18–5.75	13.75–20.05	[31, 52, 70]
					AUDPC	CZ17, MY16, MY17, BLUP	4.3–6.6	14.39–23.3
	1,223,817	5B	66.35	523.93	FDS	CZ17, MY17, BLUP	4.26–5.8	14.04–20.08
					AUDPC	CZ17, MY16, MY17, BLUP	4.31–6.09	14.44–21.31
QYrsicau-6A	3,021,470	6A	78.71	609.38	FDS	CZ17	3.44	11.44
QYrsicau-6A					AUDPC	CZ16, CZ17, BLUP	3.06–4.2	9.76–14.38

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