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Table 1 Summary of sequence reads for MSB and NSB samples

From: Comparative whole-genome and proteomics analyses of the next seed bank and the original master seed bank of MucoRice-CTB 51A line, a rice-based oral cholera vaccine

  

Total reads

Mapped reads

Mapping rate (%)

Coverage rate (%)

Depth average

DDBJ experiment accession No.a

PG0217_02_a

MSB_1

389,649,421

382,752,568

98.23

94.6

97.54

DRX246636

PG2764_02_a

MSB_2

181,363,917

177,123,344

97.66

93.1

60.12

DRX246637

PG2764_07_b

MSB_3

210,105,305

206,082,524

98.09

97.3

68.83

DRX246638

PG2302_01_a

NSB_1

471,799,917

468,225,863

99.24

95.3

118.72

DRX246639

PG2764_03_a

NSB_2

170,255,253

164,675,845

96.72

86.2

56.35

DRX246640

PG2764_08_b

NSB_3

176,372,027

173,912,788

98.61

91.4

59.29

DRX246641

  1. Mapping rate is the ratio of the number of mapped reads to that of total reads. Covered length is the number of genome bases covered with at least one read. Coverage rate is the ratio of covered length to the total length of the rice reference genome (373,245,519 bps, IRGSP-1.0, build 5 in RAP-DB (https://rapdb.dna.affrc.go.jp/download/irgsp1.html)). Depth (the average number of reads covering a genome) was calculated by dividing the total length of all mapped reads (100 bps per read) by covered length. a Data set of each experiment accession number is listed in https://www.ncbi.nlm.nih.gov/sra/?term=DRA011151