| | |
Total reads
|
Mapped reads
|
Mapping rate (%)
|
Coverage rate (%)
|
Depth average
|
DDBJ experiment accession No.a
|
|---|
|
PG0217_02_a
|
MSB_1
|
389,649,421
|
382,752,568
|
98.23
|
94.6
|
97.54
|
DRX246636
|
|
PG2764_02_a
|
MSB_2
|
181,363,917
|
177,123,344
|
97.66
|
93.1
|
60.12
|
DRX246637
|
|
PG2764_07_b
|
MSB_3
|
210,105,305
|
206,082,524
|
98.09
|
97.3
|
68.83
|
DRX246638
|
|
PG2302_01_a
|
NSB_1
|
471,799,917
|
468,225,863
|
99.24
|
95.3
|
118.72
|
DRX246639
|
|
PG2764_03_a
|
NSB_2
|
170,255,253
|
164,675,845
|
96.72
|
86.2
|
56.35
|
DRX246640
|
|
PG2764_08_b
|
NSB_3
|
176,372,027
|
173,912,788
|
98.61
|
91.4
|
59.29
|
DRX246641
|
- Mapping rate is the ratio of the number of mapped reads to that of total reads. Covered length is the number of genome bases covered with at least one read. Coverage rate is the ratio of covered length to the total length of the rice reference genome (373,245,519 bps, IRGSP-1.0, build 5 in RAP-DB (https://rapdb.dna.affrc.go.jp/download/irgsp1.html)). Depth (the average number of reads covering a genome) was calculated by dividing the total length of all mapped reads (100 bps per read) by covered length. a Data set of each experiment accession number is listed in https://www.ncbi.nlm.nih.gov/sra/?term=DRA011151
