Skip to main content

Table 1 Overview of the RNA sequencing data

From: Identification and analysis of long non-coding RNAs and mRNAs in chicken macrophages infected with avian infectious bronchitis coronavirus

Sample

Raw Data Reads No.

Bases (bp)

Q30 (bp)

Clean Reads No

Clean Bases (bp)

Clean Reads %

Genome Mapping Rate

Sequencing Mode

C-1

150,897,246

22,634,586,900

21,331,618,679 (94.24%)

137,417,676

20,612,651,400

91.06

125,822,533 (91.56%)

Paired-end,2 × 150 bp

C-2

137,054,082

20,558,112,300

19,407,891,463 (94.4%)

126,612,888

18,991,933,200

92.38

116,736,730 (92.20%)

Paired-end,2 × 150 bp

C-3

138,645,590

20,796,838,500

19,632,609,578 (94.4%)

124,766,544

18,714,981,600

89.98

114,421,545 (91.71%)

Paired-end,2 × 150 bp

E-1

129,518,036

19,427,705,400

18,289,744,390 (94.14%)

117,058,784

17,558,817,600

90.38

107,868,528 (92.15%)

Paired-end,2 × 150 bp

E-2

154,994,906

23,249,235,900

21,875,735,326 (94.09%)

139,996,898

20,999,534,700

90.32

129,086,227 (92.21%)

Paired-end,2 × 150 bp

E-3

130,792,272

19,618,840,800

18,520,223,188 (94.4%)

119,803,500

17,970,525,000

91.59

110,508,187 (92.24%)

Paired-end,2 × 150 bp

Average

140,317,022

21,047,553,300

19,842,970,437 (94.27%)

127,609,381

19,141,407,250

90.95

117,407,291 (92.01%)

 
  1. Q30: nucleotides with a quality value above 30 in reads
  2. Genome mapping rate: the percentage of reads mapped to the reference genome