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Fig. 6 | BMC Genomics

Fig. 6

From: Reliability of genomic variants across different next-generation sequencing platforms and bioinformatic processing pipelines

Fig. 6

Distribution of variants failing the MAF 5% and HWE 5% filter criteria. Bar plots show the absolute number of SNPs (a) and indels (b) with MAF < 0.05 and HWE < 0.05 under each experimental condition. The distribution of such variants in high or low confidence variant call intervals according to the GIAB project is shown for SNPs (c) and indels (d). Box plots in e-f show the read depth’s distribution for variants with MAF < 0.05 and HWE < 0.05 for SNPs and indels, respectively

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