Skip to main content

Advertisement

Table 2 Summary of RNA-seq reads generated in the study

From: Transcriptomic analysis of gene expression of Verticillium dahliae upon treatment of the cotton root exudates

Sample nameRaw readsClean readsClean basesError rate (%)Q20 (%)Q30 (%)GC content (%)
Vd-X-6a20,755,06619,829,7202.97G0.0394.5286.9558.14
Vd-X-6b20,008,56819,162,7402.87G0.0395.1388.1958.81
Vd-X-12a20,745,45019,871,3762.98G0.0394.5787.0957.72
Vd-X-12b17,752,47815,961,6082.39G0.0297.0791.3558.61
Vd-X-24a18,562,57617,673,7462.65G0.0394.7887.4358.56
Vd-X-24b18,713,22417,855,8942.68G0.0394.5586.9558.54
Vd-X-48a22,863,13021,469,9143.22G0.0394.6587.5951.86
Vd-X-48b21,450,22020,335,0923.05G0.0394.8287.7453.99
Vd-Z-6a19,384,50618,572,8082.79G0.0394.5486.9658.28
Vd-Z-6b18,947,74616,766,5602.51G0.0295.9489.1958.19
Vd-Z-12a19,116,15616,262,7602.44G0.0296.4790.1858.60
Vd-Z-12b15,846,55213,820,7682.07G0.0297.0590.9556.33
Vd-Z-24a22,527,85019,634,8382.95G0.0297.9293.1658.10
Vd-Z-24b22,678,98619,618,6382.94G0.0297.8793.0457.99
Vd-Z-48a18,786,64418,043,6582.71G0.0294.6287.7551.51
Vd-Z-48b16,083,89015,364,8702.3G0.0294.8488.0753.31
Vd-H-6a17,277,27215,290,7142.29G0.0396.7890.3456.08
Vd-H-6b23,964,81221,120,4483.17G0.0297.8993.1558.23
Vd-H-12a16,150,50813,729,9882.06G0.0297.1190.8758.16
Vd-H-12b22,302,81819,253,0122.89G0.0297.8192.9656.86
Vd-H-24a14,972,86813,927,3362.09G0.0396.7290.1357.15
Vd-H-24b14,514,16013,125,7721.97G0.0396.7690.2656.60
Vd-H-48a18,826,77616,337,9222.45G0.0296.2089.6346.23
Vd-H-48b17,007,50814,591,9642.19G0.0295.7089.1353.93
Vd-W-6a15,061,22213,654,5982.05G0.0396.8890.4357.86
Vd-W-6b22,050,47021,031,7203.15G0.0296.2790.8656.02
Vd-W-12a22,264,26821,134,3863.17G0.0296.0890.4655.72
Vd-W-12b20,529,69019,622,3722.94G0.0295.7889.4357.29
Vd-W-24a15,761,39415,360,1742.3G0.0294.8688.0754.29
Vd-W-24b23,275,93022,685,3283.4G0.0295.7189.6458.51
Vd-W-48a18,328,72017,868,8542.68G0.0294.9788.4648.13
Vd-W-48b22,437,74221,421,1063.21G0.0394.4187.0857.12
Vd-0a (CKa)16,237,48815,825,1262.37G0.0295.3788.7758.51
Vd-0b (CKb)14,193,49613,833,7762.08G0.0295.3088.5458.72