Transcriptomic analysis of gene expression of Verticillium dahliae upon treatment of the cotton root exudates

Zhang, Xinyu; Cheng, Wenhan; Feng, Zhidi; Zhu, Qianhao; Sun, Yuqiang; Li, Yanjun; Sun, Jie

doi:10.1186/s12864-020-6448-9

BMC Genomics

Table 2 Summary of RNA-seq reads generated in the study

From: Transcriptomic analysis of gene expression of Verticillium dahliae upon treatment of the cotton root exudates

Sample name	Raw reads	Clean reads	Clean bases	Error rate (%)	Q20 (%)	Q30 (%)	GC content (%)
Vd-X-6a	20,755,066	19,829,720	2.97G	0.03	94.52	86.95	58.14
Vd-X-6b	20,008,568	19,162,740	2.87G	0.03	95.13	88.19	58.81
Vd-X-12a	20,745,450	19,871,376	2.98G	0.03	94.57	87.09	57.72
Vd-X-12b	17,752,478	15,961,608	2.39G	0.02	97.07	91.35	58.61
Vd-X-24a	18,562,576	17,673,746	2.65G	0.03	94.78	87.43	58.56
Vd-X-24b	18,713,224	17,855,894	2.68G	0.03	94.55	86.95	58.54
Vd-X-48a	22,863,130	21,469,914	3.22G	0.03	94.65	87.59	51.86
Vd-X-48b	21,450,220	20,335,092	3.05G	0.03	94.82	87.74	53.99
Vd-Z-6a	19,384,506	18,572,808	2.79G	0.03	94.54	86.96	58.28
Vd-Z-6b	18,947,746	16,766,560	2.51G	0.02	95.94	89.19	58.19
Vd-Z-12a	19,116,156	16,262,760	2.44G	0.02	96.47	90.18	58.60
Vd-Z-12b	15,846,552	13,820,768	2.07G	0.02	97.05	90.95	56.33
Vd-Z-24a	22,527,850	19,634,838	2.95G	0.02	97.92	93.16	58.10
Vd-Z-24b	22,678,986	19,618,638	2.94G	0.02	97.87	93.04	57.99
Vd-Z-48a	18,786,644	18,043,658	2.71G	0.02	94.62	87.75	51.51
Vd-Z-48b	16,083,890	15,364,870	2.3G	0.02	94.84	88.07	53.31
Vd-H-6a	17,277,272	15,290,714	2.29G	0.03	96.78	90.34	56.08
Vd-H-6b	23,964,812	21,120,448	3.17G	0.02	97.89	93.15	58.23
Vd-H-12a	16,150,508	13,729,988	2.06G	0.02	97.11	90.87	58.16
Vd-H-12b	22,302,818	19,253,012	2.89G	0.02	97.81	92.96	56.86
Vd-H-24a	14,972,868	13,927,336	2.09G	0.03	96.72	90.13	57.15
Vd-H-24b	14,514,160	13,125,772	1.97G	0.03	96.76	90.26	56.60
Vd-H-48a	18,826,776	16,337,922	2.45G	0.02	96.20	89.63	46.23
Vd-H-48b	17,007,508	14,591,964	2.19G	0.02	95.70	89.13	53.93
Vd-W-6a	15,061,222	13,654,598	2.05G	0.03	96.88	90.43	57.86
Vd-W-6b	22,050,470	21,031,720	3.15G	0.02	96.27	90.86	56.02
Vd-W-12a	22,264,268	21,134,386	3.17G	0.02	96.08	90.46	55.72
Vd-W-12b	20,529,690	19,622,372	2.94G	0.02	95.78	89.43	57.29
Vd-W-24a	15,761,394	15,360,174	2.3G	0.02	94.86	88.07	54.29
Vd-W-24b	23,275,930	22,685,328	3.4G	0.02	95.71	89.64	58.51
Vd-W-48a	18,328,720	17,868,854	2.68G	0.02	94.97	88.46	48.13
Vd-W-48b	22,437,742	21,421,106	3.21G	0.03	94.41	87.08	57.12
Vd-0a (CKa)	16,237,488	15,825,126	2.37G	0.02	95.37	88.77	58.51
Vd-0b (CKb)	14,193,496	13,833,776	2.08G	0.02	95.30	88.54	58.72

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ISSN: 1471-2164

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