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Table 4 Up-regulated genes with known functions in Vd-X, Vd-Z and Vd-H at early stages of interaction

From: Transcriptomic analysis of gene expression of Verticillium dahliae upon treatment of the cotton root exudates

Code

Gene ID

Enzyme name

FPKM value

CK

VdX6

VdX12

VdZ6

VdZ12

VdH6

VdH12

VdW6

VdW12

1

VDAG_02051

High-affinity glucose transporter ght2

29.4802

22.04664

84.23955

47.6086

60.97154

93.52616

103.058

46.62293

30.56167

2

VDAG_03649

Sugar transporter

0.338716

1.026522

0.972863

0.571231

1.115773

0.729055

1.128715

0.509536

0.50572

3

VDAG_09835

Hexose transporter

1.465257

3.968813

3.936814

4.569835

3.108347

4.246236

2.397604

1.989069

1.935044

4

VDAG_09983

Sugar transporter

0.826351

1.330852

1.620789

1.96333

0.809208

1.517935

1.816533

1.172747

1.108737

5

VDAG_00832

Inner membrane transport protein yfaV

1.328122

2.69694

3.987047

4.988756

2.544548

6.30185

3.71284

2.102835

2.608609

6

VDAG_00833

Thiol-specific monooxygenase

2.812437

3.372149

6.229075

6.864658

4.642015

6.132306

2.821518

3.31251

3.406964

7

VDAG_02269

Pantothenate transporter liz1

0.574735

10.51644

3.593005

0.612767

8.552547

5.701658

0.157546

0.281539

0.041829

8

VDAG_07864

DUF895 domain membrane protein

0

0.358107

0.365747

0.645067

0.105314

0.505642

0.342338

0.213305

0.133121

9

VDAG_01073

NAD (P) H-dependent D-xylose reductase

15.75744

20.66968

30.75152

33.81787

26.80472

28.37045

28.33363

16.91421

18.73819

10

VDAG_01137

Thiamine thiazole synthase

614.5958

1120.375

879.3086

769.972

1351.333

1043.097

1213.615

780.4955

914.2021

11

VDAG_01672

Conidial development protein fluffy

12.03245

22.95618

16.67069

14.22671

23.65364

22.70368

24.9867

13.75736

15.00116

12

VDAG_02162

Oviduct-specific glycoprotein

0.227984

0.693403

0.423062

0.620165

0.335718

0.664225

0.702286

0.371898

0.391474

13

VDAG_02175

Beta-glucosidase

0

0.230686

0.231927

0.374579

0.232406

0.403597

0.098718

0.036308

0.102984

14

VDAG_02633

Beta-lactamase family protein

3.050937

6.146087

5.612143

6.318416

5.777795

7.129429

6.223959

3.304537

4.690835

15

VDAG_02843

Fibronectin

2.255216

3.641777

4.31623

4.346089

2.988267

4.024384

4.227908

3.217397

3.142531

16

VDAG_02844

Ubiquitin carboxyl-terminal hydrolase

1.953236

4.647556

3.491474

2.867615

4.295582

3.838786

3.769097

2.859783

2.493258

17

VDAG_03942

Beta-lactamase family protein

3.714124

111.1741

18.61932

8.608223

65.63955

58.8475

0.267788

5.385614

1.313926

18

VDAG_03943

Cyclopentanone 1,2-monooxygenase

3.091277

213.913

27.61544

13.96051

120.0825

92.52951

0.866178

8.16749

2.187358

19

VDAG_04707

Helicase SWR1

81.01633

152.1582

107.6387

110.2411

147.0122

139.7217

137.8717

105.301

132.1303

20

VDAG_05314

N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valine synthase

9.774005

25.65614

14.10339

15.6124

19.11988

27.47597

19.27068

15.58876

16.02938

21

VDAG_05458

Acetylxylan esterase

0.553047

2.897187

2.187976

2.776539

2.587627

1.928449

0.968931

0.862581

0.885039

22

VDAG_06953

Kinesin light chain

0.425595

1.336314

0.641706

0.95834

1.168227

1.627748

1.075756

0.38034

0.897279

23

VDAG_08600

Thiopurine S-methyltransferase family protein

28.38327

41.42097

71.57507

56.80394

59.66433

60.43575

62.81802

37.98759

38.88032

24

VDAG_08689

Retinol dehydrogenase

1.932819

2.608155

6.598116

8.790265

6.5672

4.225019

3.010194

3.177277

3.647746

25

VDAG_08954

Carboxylic ester hydrolase

0.956565

3.376228

5.336164

4.806672

3.062654

6.82588

2.173958

2.390473

1.772136

27

VDAG_08979

URE2 protein

4.080627

6.68038

7.958957

8.914888

7.624858

8.220244

5.710169

4.310528

4.728051

26

VDAG_09114

Galactose oxidase

0.076631

0.245438

0.555276

0.588735

0.221988

0.772877

0.178927

0.184511

0.193227

28

VDAG_09269

NAD (P) transhydrogenase

1.434656

5.410515

2.93751

2.364836

2.830261

3.377882

1.639596

1.075059

1.322266

29

VDAG_09707

Amidase

0.340497

0.597686

1.138296

0.675114

0.853334

1.090583

0.668288

0.390384

0.487727

30

VDAG_10195

Vacuolar protein sorting-associated protein

10.90674

26.16851

16.17757

16.16115

23.07354

25.98232

21.03424

16.03954

16.69196

31

VDAG_10402

Isoamyl alcohol oxidase

1.289472

3.463787

3.225775

3.469081

3.14358

3.691591

2.373917

2.260947

2.547368