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Table 6 Up-regulated Genes with known functions only in Vd-X at early stages of interaction

From: Transcriptomic analysis of gene expression of Verticillium dahliae upon treatment of the cotton root exudates

CodeGene IDEnzyme nameFPKM value
CKVdX6VdX12VdZ6VdZ12VdH6VdH12VdW6VdW12
1VDAG_01555Alpha-glucosidase0.5251391.3512490.6310040.6055640.6200460.5908790.459850.4029970.450216
2VDAG_01866Xylosidase/arabinosidase2.9996336.7374253.1588293.2393912.543923.4261932.853722.5222212.049945
3VDAG_03038Trehalase4.03701810.345594.1712793.3287263.7238643.1690993.5255872.6888632.205004
4VDAG_03553Alpha-N-arabinofuranosidase2.0177132.8406814.0438693.2041452.2746023.4875332.4670852.3196051.751206
5VDAG_03526Alpha-glucuronidase3.0775527.6490313.0259712.9069853.3576153.5217922.0737642.327112.3016
6VDAG_03790Endo-1,4-beta-xylanase0.9884963.3039211.0498340.9370630.5640550.8726580.735470.5599910.670659
7VDAG_06165Endo-1,4-beta-xylanase0.8086521.6065391.9306021.2133141.2499541.2295881.6470820.8700661.601574
8VDAG_07983Mixed-linked glucanase2.2644955.119952.2584422.2326942.3491811.6912250.8932421.8402871.631545
9VDAG_09516Glucanase0.5657261.4190570.6165390.7660831.1685630.6441830.5908240.4269340.643502
10VDAG_01193High-affinity nicotinic acid transporter0.9229624.4748842.3894951.3675052.2930241.1588771.0523561.0034270.855293
11VDAG_02089Quinate permease0.2466521.2397590.270950.0398960.3055450.1334670.0529490.0900750
12VDAG_02826Voltage-gated potassium channel subunit beta-10.526361.7701481.557520.5392010.5006660.4711940.4463430.288940.387249
13VDAG_03714Sugar transporter00.3297930.1922730.0389480.1057260.0670010.0516910.0879350.148554
14VDAG_04513Hexose transporter protein2.1942436.0317842.318662.7340942.487472.4075331.5093541.425931.515528
15VDAG_05125Oligopeptide transporter 10.106540.485340.3406370.2443060.119790.1463670.0356560.110360.100641
16VDAG_06060Oligopeptide transporter 21.2733163.5074721.4245911.0918231.4009671.4072740.8637390.9549530.987525
17VDAG_07141H+/hexose cotransporter 11.1745473.1935652.1103521.5785452.0209172.374351.5437191.336771.028067
18VDAG_07563Sugar transporter STL13.61744923.462944.6271674.4481563.6301244.0305193.5222122.7854851.485532
19VDAG_08086Vitamin H transporter 11.6114872.8739233.843321.8655093.0106862.4684181.5838151.7103992.150159
20VDAG_09088MFS transporter0.3386523.604460.3937070.7391290.4025410.8353130.0998411.0232190.125486
21VDAG_09121Maltose permease MAL312.0609673.6472713.1121862.2274952.5850633.2147632.7160282.037352.722908
22VDAG_09734Major myo-inositol transporter iolT8.60481727.0488211.021098.861739.04065110.255335.4416787.2470845.418201
23VDAG_00798Calphotin2.42984.7955053.5192563.8925623.2263394.2600043.4607532.9020652.982781
24VDAG_011764-coumarate-CoA ligase0.2861.4035830.440090.3811140.5560270.3205580.538750.1057660.323503
25VDAG_01341Methylitaconate delta2-delta3-isomerase0.8999461.1321722.1385071.6649661.3647322.2369221.5092041.6111621.286028
26VDAG_01782Pectinesterase family protein4.7339879.5758965.0531276.4122386.1000816.1279815.9542524.9596626.786958
27VDAG_01783Modification methylase Sau96I0.0818590.1889080.3071390.2307150.0743690.2656760.1157250.0592750.191795
28VDAG_01869Taurine catabolism dioxygenase TauD10.8542819.9177115.6895517.5468414.009316.8137717.2737213.0478216.37882
29VDAG_01837Metallo-beta-lactamase superfamily protein0.7169782.1025562.3716031.814651.7488651.7275760.9570631.3889161.043824
30VDAG_03354Pectate lyase0.2599570.6185151.2557780.9300040.5910070.5262870.190590.1212780.308629
31VDAG_03792Beta-fructofuranosidase1.4174895.8254621.2140821.1613831.0053431.3335730.6689520.8220750.921293
32VDAG_03800Phosphate transporter1.0664410.9592262.0100111.4106331.6830931.108691.1492761.1835680.876848
33VDAG_03894Lipase0.0792720.0632310.6239160.4158270.0912180.1670240.2194620.1791330.25405
34VDAG_03891Acetamidase2.5013196.0747644.1245513.0802633.8946772.8798711.7761091.4023262.302258
35VDAG_03941Regulatory protein alcR0.4749472.5254260.8649331.0510240.8129030.6738340.2630230.1689620.879413
36VDAG_039704-trimethylaminobutyraldehyde dehydrogenase1.116734.9610361.5157471.0657591.5588650.8862260.6670510.3113350.77097
37VDAG_04175SAM and PH domain-containing protein2.5083124.8968922.0962342.2068012.6726852.291612.2478362.2219881.767456
38VDAG_04685AdhA00.7493110.3636230.1327370.4182090.13955800.1841840
39VDAG_04961Aldehyde dehydrogenase0.3048780.9850350.4911270.2466940.2512390.3811070.5006140.0368830.037001
40VDAG_05050Choline monooxygenase1.3427221.1702443.3321281.0627620.4744550.6970890.4504560.5085670.251975
41VDAG_05135Carboxypeptidase S100.1996640.2179010.0762680.0388680.17994800.0464690.064716
42VDAG_052973-alpha-(Or 20-beta)-hydroxysteroid dehydrogenase0.5027180.8591571.5244761.1180181.2769750.5440560.6680991.0773080.380073
43VDAG_053243-alpha-(Or 20-beta)-hydroxysteroid dehydrogenase0.4246322.7289210.8533710.7028730.8064260.9004670.359430.5842180.73203
44VDAG_05455Gamma-glutamyltranspeptidase8.09785414.622897.230676.83745510.225248.8043637.0838377.0276917.604183
45VDAG_05780Long-chain-alcohol oxidase12.2091723.3850913.1857213.3418711.4987513.685439.47727210.8710612.46451
46VDAG_06126Secreted protein0.3963822.5402190.3491840.2211780.5222920.4190480.3316050.1465860.504571
47VDAG_06334Sodium/bile acid cotransporter 7-A5.97555310.448676.9862227.1343316.9866815.9257245.777496.1499326.790046
48VDAG_06756Aldo-keto reductase yakc00.0648680.4308660.06894600.0856740.0668200
49VDAG_06997Epoxide hydrolase00.3436470.0570840.1800360.2298050.2294290.13780900
50VDAG_07057Acetyl-coenzyme A synthetase23.0769871.9183728.5397825.5078823.8777725.4120115.2827911.0047713.18577
51VDAG_07158ECM14 protein1.3125331.6586482.7655042.4566032.032521.4880090.9443831.825071.283626
52VDAG_07166Carnitine O-palmitoyltransferase I17.1239331.3269917.3537913.9326519.816720.4891214.9980812.5623512.11036
53VDAG_07544Non-specific lipid-transfer protein7.07377914.020169.85316611.520676.7892177.234116.9392486.2073765.102574
54VDAG_07681ATP-binding cassette sub-family G member 50.2804933.0965870.361070.5021720.4909470.4266780.3943450.5560720.142852
55VDAG_07728Adenine deaminase0.8713410.7302221.8626471.3351890.6138710.8428050.836561.7805610.44741
56VDAG_07980Peptide hydrolase4.54749711.548466.5805914.8699315.1402425.6411553.0533644.2996072.724793
57VDAG_08067Pectate lyase B1.5976563.5495482.3644152.8644072.7378172.9605741.7702142.3579851.326954
58VDAG_08286Alpha-glucosides permease MPH2/33.76141910.002472.8464493.8550322.853634.0668612.2651012.820290.99225
59VDAG_08654Acetyl-coenzyme A synthetase6.31148225.4737511.44977.0456199.6816329.4024154.8857085.4358724.019251
60VDAG_08703Alpha-1,2 mannosyltransferase KTR10.1158930.3323170.9965460.7260130.6076460.4441180.7739150.2336830.497122
61VDAG_09082Succinyl-CoA:3-ketoacid-coenzyme A transferase4.46156915.452788.70046811.871256.8127866.7957122.99583.1176043.772685
62VDAG_09253Sulfate transporter0.6215831.0032731.9252730.9961730.6141540.5920440.5905460.2118950.651484
63VDAG_09313Alpha-ketoglutarate-dependent sulfonate dioxygenase1.1205431.5961032.7033011.5207191.3366622.0827271.9753421.3988532.107069
64VDAG_09583Alcohol oxidase0.03710.9469640.0299180.1661050.1707650.2014090.0304830.0290960
65VDAG_09712Succinate/fumarate mitochondrial transporter14.6715266.418723.340111.3197819.5246918.523144.751215.7919216.018953
66VDAG_09813C6 transcription factor RegA0.3551931.3019470.4570380.474280.5434370.505410.3229720.2662670.23939
67VDAG_10171Fungal specific transcription factor domain-containing protein1.8906013.3535883.5701532.6244262.2423212.54531.9631632.841322.766448
68VDAG_10443Rhamnogalacturonan lyase2.3965044.6657572.8484672.5094982.1898742.6206331.9584172.446321.750408