Skip to main content

Table 6 Up-regulated Genes with known functions only in Vd-X at early stages of interaction

From: Transcriptomic analysis of gene expression of Verticillium dahliae upon treatment of the cotton root exudates

Code

Gene ID

Enzyme name

FPKM value

CK

VdX6

VdX12

VdZ6

VdZ12

VdH6

VdH12

VdW6

VdW12

1

VDAG_01555

Alpha-glucosidase

0.525139

1.351249

0.631004

0.605564

0.620046

0.590879

0.45985

0.402997

0.450216

2

VDAG_01866

Xylosidase/arabinosidase

2.999633

6.737425

3.158829

3.239391

2.54392

3.426193

2.85372

2.522221

2.049945

3

VDAG_03038

Trehalase

4.037018

10.34559

4.171279

3.328726

3.723864

3.169099

3.525587

2.688863

2.205004

4

VDAG_03553

Alpha-N-arabinofuranosidase

2.017713

2.840681

4.043869

3.204145

2.274602

3.487533

2.467085

2.319605

1.751206

5

VDAG_03526

Alpha-glucuronidase

3.077552

7.649031

3.025971

2.906985

3.357615

3.521792

2.073764

2.32711

2.3016

6

VDAG_03790

Endo-1,4-beta-xylanase

0.988496

3.303921

1.049834

0.937063

0.564055

0.872658

0.73547

0.559991

0.670659

7

VDAG_06165

Endo-1,4-beta-xylanase

0.808652

1.606539

1.930602

1.213314

1.249954

1.229588

1.647082

0.870066

1.601574

8

VDAG_07983

Mixed-linked glucanase

2.264495

5.11995

2.258442

2.232694

2.349181

1.691225

0.893242

1.840287

1.631545

9

VDAG_09516

Glucanase

0.565726

1.419057

0.616539

0.766083

1.168563

0.644183

0.590824

0.426934

0.643502

10

VDAG_01193

High-affinity nicotinic acid transporter

0.922962

4.474884

2.389495

1.367505

2.293024

1.158877

1.052356

1.003427

0.855293

11

VDAG_02089

Quinate permease

0.246652

1.239759

0.27095

0.039896

0.305545

0.133467

0.052949

0.090075

0

12

VDAG_02826

Voltage-gated potassium channel subunit beta-1

0.52636

1.770148

1.55752

0.539201

0.500666

0.471194

0.446343

0.28894

0.387249

13

VDAG_03714

Sugar transporter

0

0.329793

0.192273

0.038948

0.105726

0.067001

0.051691

0.087935

0.148554

14

VDAG_04513

Hexose transporter protein

2.194243

6.031784

2.31866

2.734094

2.48747

2.407533

1.509354

1.42593

1.515528

15

VDAG_05125

Oligopeptide transporter 1

0.10654

0.48534

0.340637

0.244306

0.11979

0.146367

0.035656

0.11036

0.100641

16

VDAG_06060

Oligopeptide transporter 2

1.273316

3.507472

1.424591

1.091823

1.400967

1.407274

0.863739

0.954953

0.987525

17

VDAG_07141

H+/hexose cotransporter 1

1.174547

3.193565

2.110352

1.578545

2.020917

2.37435

1.543719

1.33677

1.028067

18

VDAG_07563

Sugar transporter STL1

3.617449

23.46294

4.627167

4.448156

3.630124

4.030519

3.522212

2.785485

1.485532

19

VDAG_08086

Vitamin H transporter 1

1.611487

2.873923

3.84332

1.865509

3.010686

2.468418

1.583815

1.710399

2.150159

20

VDAG_09088

MFS transporter

0.338652

3.60446

0.393707

0.739129

0.402541

0.835313

0.099841

1.023219

0.125486

21

VDAG_09121

Maltose permease MAL31

2.060967

3.647271

3.112186

2.227495

2.585063

3.214763

2.716028

2.03735

2.722908

22

VDAG_09734

Major myo-inositol transporter iolT

8.604817

27.04882

11.02109

8.86173

9.040651

10.25533

5.441678

7.247084

5.418201

23

VDAG_00798

Calphotin

2.4298

4.795505

3.519256

3.892562

3.226339

4.260004

3.460753

2.902065

2.982781

24

VDAG_01176

4-coumarate-CoA ligase

0.286

1.403583

0.44009

0.381114

0.556027

0.320558

0.53875

0.105766

0.323503

25

VDAG_01341

Methylitaconate delta2-delta3-isomerase

0.899946

1.132172

2.138507

1.664966

1.364732

2.236922

1.509204

1.611162

1.286028

26

VDAG_01782

Pectinesterase family protein

4.733987

9.575896

5.053127

6.412238

6.100081

6.127981

5.954252

4.959662

6.786958

27

VDAG_01783

Modification methylase Sau96I

0.081859

0.188908

0.307139

0.230715

0.074369

0.265676

0.115725

0.059275

0.191795

28

VDAG_01869

Taurine catabolism dioxygenase TauD

10.85428

19.91771

15.68955

17.54684

14.0093

16.81377

17.27372

13.04782

16.37882

29

VDAG_01837

Metallo-beta-lactamase superfamily protein

0.716978

2.102556

2.371603

1.81465

1.748865

1.727576

0.957063

1.388916

1.043824

30

VDAG_03354

Pectate lyase

0.259957

0.618515

1.255778

0.930004

0.591007

0.526287

0.19059

0.121278

0.308629

31

VDAG_03792

Beta-fructofuranosidase

1.417489

5.825462

1.214082

1.161383

1.005343

1.333573

0.668952

0.822075

0.921293

32

VDAG_03800

Phosphate transporter

1.066441

0.959226

2.010011

1.410633

1.683093

1.10869

1.149276

1.183568

0.876848

33

VDAG_03894

Lipase

0.079272

0.063231

0.623916

0.415827

0.091218

0.167024

0.219462

0.179133

0.25405

34

VDAG_03891

Acetamidase

2.501319

6.074764

4.124551

3.080263

3.894677

2.879871

1.776109

1.402326

2.302258

35

VDAG_03941

Regulatory protein alcR

0.474947

2.525426

0.864933

1.051024

0.812903

0.673834

0.263023

0.168962

0.879413

36

VDAG_03970

4-trimethylaminobutyraldehyde dehydrogenase

1.11673

4.961036

1.515747

1.065759

1.558865

0.886226

0.667051

0.311335

0.77097

37

VDAG_04175

SAM and PH domain-containing protein

2.508312

4.896892

2.096234

2.206801

2.672685

2.29161

2.247836

2.221988

1.767456

38

VDAG_04685

AdhA

0

0.749311

0.363623

0.132737

0.418209

0.139558

0

0.184184

0

39

VDAG_04961

Aldehyde dehydrogenase

0.304878

0.985035

0.491127

0.246694

0.251239

0.381107

0.500614

0.036883

0.037001

40

VDAG_05050

Choline monooxygenase

1.342722

1.170244

3.332128

1.062762

0.474455

0.697089

0.450456

0.508567

0.251975

41

VDAG_05135

Carboxypeptidase S1

0

0.199664

0.217901

0.076268

0.038868

0.179948

0

0.046469

0.064716

42

VDAG_05297

3-alpha-(Or 20-beta)-hydroxysteroid dehydrogenase

0.502718

0.859157

1.524476

1.118018

1.276975

0.544056

0.668099

1.077308

0.380073

43

VDAG_05324

3-alpha-(Or 20-beta)-hydroxysteroid dehydrogenase

0.424632

2.728921

0.853371

0.702873

0.806426

0.900467

0.35943

0.584218

0.73203

44

VDAG_05455

Gamma-glutamyltranspeptidase

8.097854

14.62289

7.23067

6.837455

10.22524

8.804363

7.083837

7.027691

7.604183

45

VDAG_05780

Long-chain-alcohol oxidase

12.20917

23.38509

13.18572

13.34187

11.49875

13.68543

9.477272

10.87106

12.46451

46

VDAG_06126

Secreted protein

0.396382

2.540219

0.349184

0.221178

0.522292

0.419048

0.331605

0.146586

0.504571

47

VDAG_06334

Sodium/bile acid cotransporter 7-A

5.975553

10.44867

6.986222

7.134331

6.986681

5.925724

5.77749

6.149932

6.790046

48

VDAG_06756

Aldo-keto reductase yakc

0

0.064868

0.430866

0.068946

0

0.085674

0.06682

0

0

49

VDAG_06997

Epoxide hydrolase

0

0.343647

0.057084

0.180036

0.229805

0.229429

0.137809

0

0

50

VDAG_07057

Acetyl-coenzyme A synthetase

23.07698

71.91837

28.53978

25.50788

23.87777

25.41201

15.28279

11.00477

13.18577

51

VDAG_07158

ECM14 protein

1.312533

1.658648

2.765504

2.456603

2.03252

1.488009

0.944383

1.82507

1.283626

52

VDAG_07166

Carnitine O-palmitoyltransferase I

17.12393

31.32699

17.35379

13.93265

19.8167

20.48912

14.99808

12.56235

12.11036

53

VDAG_07544

Non-specific lipid-transfer protein

7.073779

14.02016

9.853166

11.52067

6.789217

7.23411

6.939248

6.207376

5.102574

54

VDAG_07681

ATP-binding cassette sub-family G member 5

0.280493

3.096587

0.36107

0.502172

0.490947

0.426678

0.394345

0.556072

0.142852

55

VDAG_07728

Adenine deaminase

0.871341

0.730222

1.862647

1.335189

0.613871

0.842805

0.83656

1.780561

0.44741

56

VDAG_07980

Peptide hydrolase

4.547497

11.54846

6.580591

4.869931

5.140242

5.641155

3.053364

4.299607

2.724793

57

VDAG_08067

Pectate lyase B

1.597656

3.549548

2.364415

2.864407

2.737817

2.960574

1.770214

2.357985

1.326954

58

VDAG_08286

Alpha-glucosides permease MPH2/3

3.761419

10.00247

2.846449

3.855032

2.85363

4.066861

2.265101

2.82029

0.99225

59

VDAG_08654

Acetyl-coenzyme A synthetase

6.311482

25.47375

11.4497

7.045619

9.681632

9.402415

4.885708

5.435872

4.019251

60

VDAG_08703

Alpha-1,2 mannosyltransferase KTR1

0.115893

0.332317

0.996546

0.726013

0.607646

0.444118

0.773915

0.233683

0.497122

61

VDAG_09082

Succinyl-CoA:3-ketoacid-coenzyme A transferase

4.461569

15.45278

8.700468

11.87125

6.812786

6.795712

2.9958

3.117604

3.772685

62

VDAG_09253

Sulfate transporter

0.621583

1.003273

1.925273

0.996173

0.614154

0.592044

0.590546

0.211895

0.651484

63

VDAG_09313

Alpha-ketoglutarate-dependent sulfonate dioxygenase

1.120543

1.596103

2.703301

1.520719

1.336662

2.082727

1.975342

1.398853

2.107069

64

VDAG_09583

Alcohol oxidase

0.0371

0.946964

0.029918

0.166105

0.170765

0.201409

0.030483

0.029096

0

65

VDAG_09712

Succinate/fumarate mitochondrial transporter

14.67152

66.4187

23.3401

11.31978

19.52469

18.52314

4.75121

5.791921

6.018953

66

VDAG_09813

C6 transcription factor RegA

0.355193

1.301947

0.457038

0.47428

0.543437

0.50541

0.322972

0.266267

0.23939

67

VDAG_10171

Fungal specific transcription factor domain-containing protein

1.890601

3.353588

3.570153

2.624426

2.242321

2.5453

1.963163

2.84132

2.766448

68

VDAG_10443

Rhamnogalacturonan lyase

2.396504

4.665757

2.848467

2.509498

2.189874

2.620633

1.958417

2.44632

1.750408

Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us