Table 2 The number of structural variations detected by individual algorithms and combinations of algorithms
From: Comparison of multiple algorithms to reliably detect structural variants in pears
Combination | Insertion | Deletion | Inversion | Duplication |
|---|---|---|---|---|
Pindel | 1178 | 11,445 | 9791 | 134 |
DELLY | 1054 | 20,991 | 2976 | 4217 |
BreakDancer | 90 | 6900 | 1398 | 0 |
IMR/DENOM | 2514 | 5884 | 0 | 0 |
Pindel-DELLY | 3 | 8782 | 7997 | 89 |
Pindel-BreakDancer | 0 | 7616 | 6442 | 0 |
Pindel-IMR/DENOM | 1 | 502 | 0 | 0 |
DELLY-BreakDancer | 0 | 1192 | 129 | 0 |
DELLY-IMR/DENOM | 307 | 5152 | 0 | 0 |
BreakDancer-IMR/DENOM | 0 | 4729 | 0 | 0 |
Pindel-DELLY-IMR/DENOM | 1 | 443 | 0 | 0 |
Pindel-DELLY-BreakDancer | 0 | 7613 | 6441 | 0 |
DELLY-BreakDancer-IMR/DENOM | 0 | 4423 | 0 | 0 |
Pindel-BreakDancer-IMR/DENOM | 0 | 361 | 0 | 0 |