Skip to main content
Fig. 3 | BMC Genomics

Fig. 3

From: Genomics-based epidemiology of bovine Mycoplasma bovis strains in Israel

Fig. 3

Total-genome SNP-based phylogenetic trees of M. bovis. The phylogenetic trees were constructed using MEGAX [25] with Maximum Likelihood phylogeny method. Values on branches display support values (500 bootstraps). Branches corresponding to partitions that were reproduced in less than 50% of bootstrap replicates were collapsed. a Phylogeny of 89 M. bovis isolates isolated from mastitis on local dairy farms (1994–2017). M. bovis PG45 and M. agalactiae PG2 type strains were included into comparison and indicated by bold. The clades (I-VI) are marked and represented by different color. The designation of the isolates includes serial number or sequencing identifier (for isolates sequenced in this study), name of the isolate, type of mastitis (clinical (CM) or subclinical (SM)) and year isolation. b Phylogeny of 225 M. bovis isolates. Strains for which the complete genomes were used are shown by bold. Country’s origin of the strains is indicated by colored symbols. The different clades (1–7) are marked and represented by different color. The clades mainly contained “AU” and “EU”-related isolates are marked by green and blue colors, respectively. The designation of the isolates includes serial number or sequencing identifier (for isolates sequenced in this study), name of the isolate, anatomical site of isolation, year and country of isolation. For additional information about particular strain, see Additional file 1: Table S1. E – eye; FT – fetal tissue; J – joint; L – lung; Lr – larynx; M – milk; N – nasal cavity; P – pharynx; S – semen; V – vulva

Back to article page