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Fig. 1 | BMC Genomics

Fig. 1

From: How to study runs of homozygosity using PLINK? A guide for analyzing medium density SNP data in livestock and pet species

Fig. 1

Pruning for linkage disequilibrium (LD) has an impact on genome coverage and FROH estimation in PLINK. Genome coverage and estimated FROH cov and FROH aut are shown for different levels of LD pruning in Pietrain pigs (PIT), Belgian Blue cattle (BB), Australian Polled Merino sheep (MER) and Burmese cats (BUR). R2 values show the threshold values at which pruning was performed (SNPs with R2 > threshold were pruned from the dataset). R2 equals 1 when not pruned for LD

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BMC Genomics

ISSN: 1471-2164

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