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Fig. 5 | BMC Genomics

Fig. 5

From: Virus expression detection reveals RNA-sequencing contamination in TCGA

Fig. 5

a&b Coverage plots. Position on the x-axis and coverage on the y-axis. a Alignments of laboratory stock of MCF-7 (top panel) and ME16C RNA-seq (bottom panel) aligned to the XMV43 genome. Dot represents a position with coverage > 10 and a variant allele with frequency > 0.9. The color of the dot represents the variant allele. b Alignments of ME16C RNA-seq to the pBabe-puro hTERT-HA vector sequence (addgene Plasmid #: 1772). The color on the sequence represents the different vector components that were derived from the Moloney Murine Leukemia Virus

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