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Table 6 Contingency table of variant according to the variation score, n = 120 variants

From: Assessment of branch point prediction tools to predict physiological branch points and their alteration by variants

 

HSF

SVM-BPfinder

BPP

Branchpointer

LaBranchoR

RNABPS

Cutoff

−0.0378

−0.136

− 0.0006

−0.0003

− 0.0194

−0.0304

TP

27

29

22

10

25

27

FP

18

13

31

13

25

20

TN

62

69

51

59

57

62

FN

12

9

16

16

13

11

AUC

0.750

0.782

0.638

0.645

0.710

0.763

Accuracy

75.4%

81.67%

60.8%

70.4%

68.3%

74.2%

Sensitivity

71.1%

76.32%

57.9%

38.5%

65.8%

71.1%

Specificity

77.5%

84.15%

62.2%

81.9%

69.5%

75.6%

  1. TP (True Positive), FP (False Positive), TN (True Negative), FN (False Negative), AUC (Area Under the Curve)