Table 1 Genomic distribution of 183,144 SNPs identified among 318 sorghum accessions in the NPGS Sudan core set
| Â | Chromosome | Total | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | ||
Overlapped genes | 5260 | 3973 | 4275 | 3550 | 2234 | 2825 | 2164 | 1886 | 2574 | 2739 | 31,480 |
SNPs | |||||||||||
 5’UTR | 1183 | 878 | 873 | 812 | 711 | 688 | 535 | 755 | 630 | 648 | 7713 |
 3’UTR | 710 | 658 | 655 | 609 | 533 | 516 | 402 | 453 | 472 | 486 | 5494 |
 Missense | 1420 | 1536 | 1309 | 1218 | 1600 | 1032 | 803 | 1056 | 945 | 972 | 11,892 |
 Synonymous | 1657 | 1536 | 1309 | 1218 | 1422 | 1032 | 803 | 1056 | 1102 | 972 | 12,109 |
 Intron | 2130 | 1975 | 2400 | 2030 | 1422 | 1721 | 1205 | 1358 | 1260 | 1297 | 16,797 |
 Upstream_gene (5 kb) | 6863 | 5924 | 6110 | 5683 | 4089 | 4646 | 3213 | 3622 | 4252 | 4214 | 48,616 |
 Downstream_gene (5 kb) | 7809 | 7021 | 6982 | 6089 | 4622 | 5162 | 4016 | 3924 | 4725 | 4700 | 55,051 |
 Intergenic | 1657 | 2413 | 1746 | 2639 | 3378 | 2409 | 2276 | 2867 | 2205 | 2431 | 24,020 |
 Others | 238 | 0 | 436 | 0 | 0 | 0 | 134 | 0 | 157 | 486 | 1451 |