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Table 1 Statistic analysis of clean reads for mRNA in tuber initiation and expansion stages in yam

From: Integrated mRNA and miRNA transcriptome analysis reveals a regulatory network for tuber expansion in Chinese yam (Dioscorea opposita)

Sample

Total_1

GH16_I_r1

GH16_I_r2

GH16_I_r3

GH16_E_r1

GH16_E_r2

GH16_E_r3

Sum

Total Raw Reads (Mb)

74.71

66.43

66.42

66.52

66.43

66.43

66.35

–

Total Clean Bases (Gb)

6.67

6.57

6.57

6.58

6.56

6.57

6.56

–

Clean Reads Q20(%)

96.4

98.63

98.56

98.54

98.52

98.5

98.57

–

Clean Reads Q30(%)

88.22

93.12

92.86

92.78

92.67

92.63

92.95

–

Clean Reads Ratio(%)

89.34

98.91

98.92

98.96

98.7

98.87

98.9

–

Total Mapped Reads(%)

–

83.07

83.34

83.17

82.05

81.77

82.03

–

Total Expressed Genes

–

29,658

29,905

29,839

30,012

29,893

29,811

32,026

Total trinity Transcripts

54,781

       

Total Tgicl Genes

32,207

       

GeneGC(%)

44.63

       

GeneN50

1508

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