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Table 4 Functional classification and pathway assignment of differentially expressed DEG by GO in expansion stage

From: Integrated mRNA and miRNA transcriptome analysis reveals a regulatory network for tuber expansion in Chinese yam (Dioscorea opposita)

Tissue development [GO:0009888]

Gene ID

log2(GH16_E/GH16_I)

Actin-related protein 3

CL1179.Contig2_Total_1

−2.00

Anaphase-promoting complex subunit 10

CL1997.Contig4_Total_1

1.82

Alpha-tubulin

CL28.Contig3_Total_1

−5.08

Tubulin alpha chain

CL3054.Contig1_Total_1

−1.81

Glutamine synthetase nodule isozyme

Unigene128_Total_1

−4.98

Phosphoenolpyruvate carboxylase 2

Unigene13453_Total_1

−1.23

Phosphoenolpyruvate carboxylase 2

Unigene13455_Total_1

1.32

Anaphase-promoting complex subunit 10

Unigene18039_Total_1

− 1.15

Anaphase-promoting complex subunit 6

Unigene2600_Total_1

−1.06

Actin-related protein 2

Unigene4771_Total_1

−1.10

ATPase ASNA1 homolog

Unigene5972_Total_1

−1.32

Homeobox protein knotted-1-like 3

Unigene6778_Total_1

3.48

Root morphogenesi, root system development, root development [GO:0009888,GO:0022622,GO:0048364]

Cytoplasmic tRNA 2-thiolation protein 2

CL1237.Contig1_Total_1

−1.02

Cytoplasmic tRNA 2-thiolation protein 2

CL1237.Contig2_Total_1

−2.28

Mediator of RNA polymerase II transcription subunit 32

CL2787.Contig2_Total_1

2.02

Succinate dehydrogenase assembly factor 2

CL3034.Contig1_Total_1

−1.04

Guanine nucleotide-binding protein

Unigene18752_Total_1

−3.18

Enhanced ethylene response protein 5

Unigene2193_Total_1

−1.75

ATPase ASNA1

Unigene5972_Total_1

−1.32