Fig. 5From: Functional and population genetic features of copy number variations in two dairy cattle populationsLinkage disequilibrium properties of CNVRs. Average strength of linkage disequilibrium (mean r2) as a function of distance from a SNP is shown for HOL (a) and JER (b). Common CNVRs (0.05 ≤ MAF) were used for the calculation; common deletion CNVRs (magenta) and common duplication CNVRs (blue) are shown together with common SNPs (black) for comparison. Taggability for HOL (c) and JER (d) was expressed as ratio of variants in high LD (r2 > 0.8) with SNPs within 100 kb distance. Common deletion CNVRs (magenta) and common SNPs (black) are shown in the figure. Illumina BovineHD Genotyping BeadChip SNP set was used for the LD calculationBack to article page