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Table 1 The details of upland cotton rboh genes and proteins, containing physico-chemical and biochemical properties

From: Comprehensive analysis of the Gossypium hirsutum L. respiratory burst oxidase homolog (Ghrboh) gene family

Gene ID

Locus ID

Chromosome Position

Transcript Features

Protein Physicochemical Characteristics

ORF

ORF GC

Exon

Protein Length (aa)

Molecular Weight (kDa)

Isoelectric Point (pI)

GRAVY

Instability index (II)

Subcellular

Length (bp)

Content (%)

Number

Prediction

Ghrboh1

Gh_A01G0943

A01:24768615–24,772,247 +

2574

44.9

12

857

97.03

8.84

−0.29

42.35

PM

Ghrboh2

Gh_D01G0990

D01:17844890–17,848,513 +

2823

44.1

10

940

107.08

8.97

−0.22

42.59

PM

Ghrboh3

Gh_A02G1791

scaffold413_A02:53689–60,746 -

2793

44.4

14

930

106.01

9.28

−0.22

48.63

PM

Ghrboh4

Gh_D03G0688

D03:24061389–24,068,512 +

2790

44.4

14

929

105.87

9.33

−0.21

48.87

PM

Ghrboh5

Gh_A03G0476

A03:10416355–10,426,420 +

2715

42.9

12

904

102.66

8.65

−0.28

39.13

PM

Ghrboh6

Gh_D03G1062

D03:35789027–35,795,976 -

2760

43.4

12

919

103.84

8.82

−0.26

38.91

PM

Ghrboh7

Gh_A05G1666

A05:17356320–17,359,403 +

2166

45.2

10

721

81.22

9.29

−0.19

42.68

PM

Ghrboh8

Gh_D05G1864

D05:17016832–17,023,628 +

2742

45.8

12

913

102.57

9.07

−0.27

42.08

PM

Ghrboh9

Gh_A05G2211

A05:25562865–25,570,955 +

2550

47.2

11

849

94.75

9.19

−0.30

36.86

PM

Ghrboh10

Gh_D05G2471

D05:24821383–24,825,199 +

2799

46.2

11

932

105.01

9.06

−0.30

38.39

PM

Ghrboh11

Gh_A07G0143

A07:1792736–1,798,327 -

2262

43.2

11

753

85.61

9.18

−0.12

50.56

PM

Ghrboh12

Gh_D07G0136

D07:1438083–1,443,321 -

2262

43.2

11

753

85.60

9.14

−0.10

49.82

PM

Ghrboh13

Gh_A07G0398

A07:5035106–5,042,836 +

2724

42.8

11

907

102.93

9.23

−0.28

39.25

PM

Ghrboh14

Gh_D07G0463

D07:4945697–4,952,499 +

2724

42.8

11

907

102.70

9.00

−0.24

40.70

PM

Ghrboh15

Gh_A07G0856

A07:14801554–14,805,328 -

2526

42.3

13

841

95.92

9.01

−0.31

43.98

PM

Ghrboh16

Gh_D07G0928

D07:12164885–12,168,659 -

2526

42.2

13

841

95.93

9.07

−0.32

42.36

PM

Ghrboh17

Gh_A08G0982

A08:68625165–68,666,345 -

2256

44.3

15

751

86.45

9.63

−0.14

44.52

PM

Ghrboh18

Gh_D08G1257

D08:41136123–41,143,012 -

2769

45.4

14

922

105.20

9.28

−0.22

46.29

PM

Ghrboh19

Gh_A11G2426

A11:82479840–82,484,514 +

2655

45.1

12

884

100.74

9.22

−0.31

42.52

PM

Ghrboh20

Gh_D11G2743

D11:56977773–56,982,441 +

2655

45.0

12

884

100.83

9.19

−0.316

43.32

PM

Ghrboh21

Gh_A12G1774

A12:80045991–80,051,555 -

2757

44.5

12

922

104.03

9.16

−0.31

41.92

PM

Ghrboh22

Gh_D12G1932

D12:52224716–52,230,284 -

2757

44.5

12

918

104.16

9.18

−0.30

40.90

PM

Ghrboh23

Gh_A12G2653

scaffold3396_A12:21385–29,027 +

2412

43.2

14

803

91.07

9.11

−0.09

45.39

PM

Ghrboh24

Gh_D12G1807

D12:50585049–50,592,640 -

2409

42.9

14

802

90.83

8.99

−0.08

43.79

PM

Ghrboh25

Gh_A12G2669

scaffold3404_A12:26809–33,492 -

2790

44.7

14

929

105.81

9.29

−0.23

45.69

PM

Ghrboh26

Gh_D12G2750

scaffold4588_D12:62625–69,256 +

2787

44.6

14

928

105.74

9.35

−0.24

45.66

PM

  1. aa: amino acid; GRAVY: grand average of hydropathy, the GRAVY value for a peptide or protein is calculated as the sum of hydropathy values of all the amino acids, divided by the number of residues in the sequence, The greater the negative GRAVY, the better the hydrophilicity, and the greater the positive GRAVY, the stronger the hydrophobicity; The instability index (II) is a protein measurement that is used to determine whether the protein will be stable in a test tube (≤40, probably stable; > 40, probably not stable). PM: Plasma membrane.
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BMC Genomics

ISSN: 1471-2164

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