Comparative transcriptome profiling provides insights into plant salt tolerance in seashore paspalum (Paspalum vaginatum)

Wu, Peipei; Cogill, Steven; Qiu, Yijian; Li, Zhigang; Zhou, Man; Hu, Qian; Chang, Zhihui; Noorai, Rooksana E.; Xia, Xiaoxia; Saski, Christopher; Raymer, Paul; Luo, Hong

doi:10.1186/s12864-020-6508-1

Table 1 Summary of salt-induced transcription factors that are enriched among genes showing higher expression level in Supreme than in Parish under normal conditions

From: Comparative transcriptome profiling provides insights into plant salt tolerance in seashore paspalum (Paspalum vaginatum)

Gene_ID	Description	Log₂FC (S_normal/P_normal)	Log₂FC (S_salt/S_normal)	Log₂FC (P_salt/P_normal)
m.108243	hypothetical protein [Paspalum vaginatum]	2.26	NA^a	1.95
m.237095	hypothetical protein SORBIDRAFT_02g026630 [Sorghum bicolor]	2.27	NA	3.54
m.114339	hypothetical protein SORBIDRAFT_03g034670 [Sorghum bicolor]	9.36	NA	7.50
m.43990	hypothetical protein SORBIDRAFT_03g038210 [Sorghum bicolor]	1.49	NA	2.06
m.108223	hypothetical protein SORBIDRAFT_04g031960 [Sorghum bicolor]	1.97	NA	2.02
m.285764	hypothetical protein SORBIDRAFT_06g025900 [Sorghum bicolor]	3.56	NA	4.76
m.133559	PREDICTED: AP2-like ethylene-responsive transcription factor AIL5 [Setaria italica]	1.82	NA	1.51
m.108267	PREDICTED: dehydration-responsive element-binding protein 1A-like [Setaria italica]	1.81	NA	2.44
m.85022	PREDICTED: dehydration-responsive element-binding protein 1E [Setaria italica]	2.73	NA	3.88
m.26812	PREDICTED: dehydration-responsive element-binding protein 1H-like [Setaria italica]	2.72	1.01	4.46
m.84649	PREDICTED: ethylene-responsive transcription factor 2 [Setaria italica]	1.07	NA	1.00
m.204461	PREDICTED: ethylene-responsive transcription factor ERF027-like [Setaria italica]	1.22	NA	1.67
m.73960	PREDICTED: ethylene-responsive transcription factor ERF109-like [Setaria italica]	1.84	NA	3.03
m.195857	PREDICTED: homeobox-leucine zipper protein HOX25-like [Setaria italica]	1.30	NA	1.08
m.60871	PREDICTED: probable WRKY transcription factor 4 [Setaria italica]	1.21	NA	2.28
m.264805	PREDICTED: probable WRKY transcription factor 41 isoform X2 [Zea mays]	2.23	NA	1.78
m.298519	PREDICTED: probable WRKY transcription factor 70 [Setaria italica]	1.23	NA	1.28
m.160848	PREDICTED: transcription factor HBP-1b(c1)-like [Setaria italica]	1.23	NA	1.51
m.73865	PREDICTED: WRKY transcription factor 18-like [Setaria italica]	1.55	NA	3.24
m.263026	PREDICTED: zinc finger protein ZAT9 [Brachypodium distachyon]	1.17	NA	1.54
m.264779	TPA: putative WRKY DNA-binding domain superfamily protein [Zea mays]	1.04	NA	1.61

^aNA not applicable. Expression change that didn’t pass the DEGs analysis statistics (2-fold change or above, and an adjusted P value ≤0.01) is annotated as NA

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ISSN: 1471-2164

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